Gene detail

Gene detail information of Glyur000226s00010848.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32900.1	0	UDP-Glycosyltransferase superfamily protein
NR	AAC70779.1	0	granule-bound glycogen (starch) synthase [Astragalus membranaceus]
COG	YP_003371734.1	4.00E-86	glycogen/starch synthase [Pirellula staleyi DSM 6068]
Swissprot	tr\|Q43092\|SSG1_PEA	0	Granule-bound starch synthase 1, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|Q9ZSQ5\|Q9ZSQ5_ASTPN	0	Starch synthase, chloroplastic/amyloplastic {ECO:0000256\|RuleBase:RU361232}

Sequence

Transcript Sequence

>Glyur000226s00010848.1
AATCAGTGAGTAGCCATTTCAGTTCAGCTCGCTTCCGCCGGCGATAGTTGCTCACTCCTGTTCTCTCACCGGCGAAGGGAGGGTATTGAAAAATTGACATAGAAACGATGGCAACTGTGACGGGCTCTTATGTGGTGTCGAGAAGTGCGTGCCTCAACTATCAGGGAAGAACTGCAGAGGCTAAAGTGAATTCGCCTCAGATAACTCTGAATAAACGAGCATTTGCTTATGATGGGTTGAGATCTCTCAACAAGCTGCACGTGCGAACCGCACGTGTGGCCAAGACCTGTTCTTCCATTAACAAAGCTGGGAGTGAGAGGGTTTCGGGGAAGATCGTGTGTGGGAGTGGGATGAACTTGGTGTTTGTGGGAGCTGAGGTGGGACCATGGAGCAAAACTGGAGGACTTGGTGATGTNCTTGGAGGACTTCCACCAGCTTTGGCCGGAAATGGGCACCGTGTGATGACTGTGTCACCGCGTTACGACCAATACAAGGATGCATGGGATACTAGTGTGTTGGTGGAGATCAAAGTTGGAGATAAAATAGAAANTGTCCGTTTCTTTCACTGCTACAAGCGAGGAGTGGATCGTGTTTTTGTGGATCACCCAGTTTTCCTTGAGAAGGTGTGGGGCAAGACCGGATCAAAACTCTATGGCCCTAAGGCTGGAGTGGATTATAAAGATAACCAACTTAGATTCAGCTTGTTGTGCCAGGCTGCACTTGAGGCACCAAGGGTTTTGAACTTAAACAGCAGCAAATATTTCTCAGGACCATATGGCGAAGATGTAGTCTTCATTGTCAATGATTGGCACACTGCTCTTCTTCCATGCTACTTGAAATCAATGTACAAATCCAGGGGGATTTACAAAAATGCAAAGGTAGCATTATGTATACATAACATGGCCTACCAGGGTAGGCATGCCTTTTCGGACTTCTCTCTTCTCAATTTACCTAATGAATTCAAGAGCTCTTTCGACTTTACTGATGGGTATGCTAAGCCTGTGAAGGGAAGGAAGATTAATTGGATGAAGGCTGGAATATTAGAATCTGACCGAGTGTTCACTGTAAGTCCATATTATGCCCAGGAACTTGTTTCCGGAGAGGAAAGAGGTGTGGAACTGGACAATATAATTCGTTCGGTTGGCATTACTGGTATTGTGAATGGCATGGATAATCGAGAGTGGAGTCCACAAACTGATAAATACATAGATATACACTACGATGCAACAACTGTCACTGAAGCAAAATTTCTGCTGAAAGAAGCCCTTCAAGCAGAGGTTGGGTTGCCTGTTGACAGGAACATCCCTTTGATAGGGTTCATTGGGAGGCTAGAAGAGCAGAAAGGTTCTGATATTCTCGTTGAAGCTATCCCAAAGTTCATTGACCAGAATGTTCAGATAATAGTTCTTGGAACTGGCAAAAAGATCATGGAGAAGCAAATTGAGCAGCTGGAGGAAATGTATCCTGGCAAGGCTATCGGGGTAGCAAAATTCAACAGTCCCTTGGCTCACCAGATCATTGCTGGAGCTGACTTTATGGTGATCCCGAGTAGATTTGAGCCCTGTGGTCTAGTTCAGTTGCATGCCATGCCATATGGAACGGTGCCCATAGTTTCCTCAACCGGTGGACTCGTTGACACTGTTAAAGAGGGTTATACTGGATTCCACATGGGAGCATTCAGCGTAGTGTGTGAAACTGTTGATCCAGCTGATGTGGATAAGTTGGCAACTACTGTGAAGAGAGCCCTTGGAACCTATGGCACCGAGGCCATGAAAGCGATGATCCAGAACTGCATGGCACAAGACTTTTCATGGAAGGGGCCAGCCAAACAATGGGAGAAGGCACTATTGAGCCTAGGAGTCGCCGGCAGCGAACCTGGAATGGATGGGGAGGAGATTGCACCTCTTGCAAAGGGAAATGTTGCCACTCCTTGAGCATGAGCATCACCATGGAATGTCCAGATTTCAGATATGGTCATGCTCATAATCAAGAACGTTATCTAGTACTTGCTTGCAGTAGGATTGTAGTANACCTAGCCACAAACACGTAATTTGATCTACCAGTTGTAACAAAGGGACCCAGTCGTTTTCAATGGAACTTAGTTGAAGGTCCTTTTCAGTTTTCAAGCAACGTATATATATATTAGCTAAAACTAACGTAAGGTTTTGTTTTGTTTTGTTTTGTTATAAGCAACAAGGTCTTGTAAGCAATCAACGAAACTTGAAGCACCTTAGTTGTACTAAGTTTAAATGCCGTCTAAGTAAATAAAAGGCCTAGTCGATGTTGTCAAAGTCGTTCATCTGGCTTTTAATCGCAGGCTTCATAATAATAGGAAGGAGCATGGCATATTCTATTTTCTCATGTTATTGGCATTGGTCTCTCGCACTATATGTGTAAAGAAATTGTTACTCTTAAAAAAGTTTTGAAGATATATGCCATTTCGAANGTTCAATCCAGGCTAATGTAAATCAAAGTTACACGCAAGCATCGAGATTAACATCTTCATGTCACTTATCAGTGTTGATGTCCTTGCAGGTTCAGGATGTCCCCTACAGAATTTTGCCATAAATTTAATGTATGTGATACAGTCAGTTTTTNGGGAGAAAACTCCAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00226	197345	202367	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13679	WAXY	EC:2.4.1.242	Starch and sucrose metabolism	map00500
			Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009250 glucan biosynthetic process

molecular_function
GO:0009011 starch synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000226s00010848.1	PF08323.6	Glyco_transf_5	84	343	5.70E-73
Glyur000226s00010848.1	PF00534.15	Glycos_transf_1	400	521	4.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1309.615
SRR1783600	control	1332.125
SRR1783602	moderate drought stress	942.952
SRR1811619	moderate drought stress	944.840

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2030.042
DRR006520	Root Summer glycyrrhizin high producing strain	2031.135
DRR006521	Root Winter glycyrrhizin high producing strain	178.466
DRR006522	Root Winter glycyrrhizin high producing strain	175.224
DRR006523	Root Summer glycyrrhizin low producing strain	937.438
DRR006524	Root Summer glycyrrhizin low producing strain	940.351
DRR006525	Leaf Summer glycyrrhizin high producing strain	256.746
DRR006526	Leaf Summer glycyrrhizin high producing strain	251.096

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	334.928
SRR2868004	Drought Stress (root)	204.172
SRR2967015	Control (root)	152.358

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	258.868
SRR9715740	Leaf	302.801
SRR9715741	Leaf	227.906
SRR9715739	Root	599.352
SRR9715742	Root	1089.100
SRR9715743	Root	1022.268

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.105
SRR8749028	MeJA induced 9h	14.165
SRR8749029	MeJA induced 9h	21.767
SRR8749030	Uninduced	2.260
SRR8749031	Uninduced	0.627
SRR8749032	Uninduced	3.065

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1272.217
SRR8400027	Control - Root	1427.782