Gene detail

Gene detail information of Glyur000226s00010845.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G08620.2	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
NR	XP_003555549.2	PREDICTED: probable lysine-specific demethylase JMJ14-like isoform X1 [Glycine max]
Swissprot	tr\|C0SUT9\|JMJ16_ARATH	Putative lysine-specific demethylase JMJ16
trEMBL	tr\|K7N4Y4\|K7N4Y4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G36070.3}

Sequence

Transcript Sequence

>Glyur000226s00010845.1
GAAAGTTGACCAAAACAAAAAAAGGGAAACCCAACCAAAAGAAGGGAAAAAAATCATCTAGACATTAATGAAGAGAATGCAGATTTGTCTATGTTGCTTCCTTAATCGTCATCTTCCCCTATCTTGTTAGGGTTTGTGAACTTTGCAATTAGTCTTCAATTCTTCACGCTCTTCGTTCTCACCACCAGCCATCTATAGGACTTCGAATTTTATGCTTATTTTTCTGACGGATTCACCATTGTATAAACACAATTCTTTCCTGTATTCAACCATACAATAGAACATCGCAATTCCGCCACGATTTCCTTTAGATATCTCATCATAGGATTGGTGCTTTCCAGCTATTTATGAAGTTACTGGAACCTTGATTTAGCTTCTGTTGATTTGATTTTTAGCTGTCATATGTAGTGGAAGTTCAGAAAACTGACAAACTNTACATCAGTTTCTTCATAAGTACACTTCTTATCAAAGGAAGACAAATCAGAGACATTATTACCTATTGCCTTTTGCATGAGGTTACTGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGATAATGATGATTTTCCACCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCACTGGAGAGGGTAGAAGACAATGAGAAACAAAATGATGAAAATTTGACCAGTTGCTCTACCAGTGCTTCTGAGTCACAGTCAACTCAGGTAAAAAATGATGTTCAATTTCATGATACTGCAAAGGTTCCTAGATCCCTTCGACGAAGACCATGGATCAACTATGGACAATATGAGAACATTTTGGAGGAAGACTCTGATTGTGAGCGGCTTGATCAGAATTTCTCCTCAAGACCTTGTCTTCCTAAGGGAGTCATTCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTCATTGCCAGATGGCGACCAGAAGATTCCCGTAGGCCAAATCTTGAGGATGCTCTTGTTTTCTACCCCACCGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCTAGAGCTGAACCATATGGAATTTGTCGCATTGTTCCCCCGTCTTCTTGGAAACCCCCTTGTCCTCTCAAGGAGAAAAGNATATGGGAGGGTTCTAAATTTGGTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGATTCAGGGAGANAGATGCCAAGGTTTCAAAGTAATATGAAAAGGAAAAAGAGAAGATGCACAAGAATGGGAGTGGATAATGGCAGTAGAACTGGATCTAATGCAGTATTTTGTGAAGTTGAAAGGTTTGGTTTTGAACCTGGTCCAGNATTTACCTTGGAAATGTTTCAGAGATATGCAGATGATTTCAAGGTCAAATACTTCAGAAATGAGAATGTATCTCATTCAAGTGCTAATACAAATACTTTAAATGGTACCTTGGATCCTTCTGTGGAGAACATTGAGGGTGAATACTGGCGTATGGTTGAGAGTCCTACTGAAGAAATTGAGGTGCTTTANGGAGCTGATCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCTAGCAAGTCTAGTCATGTTTCCACTTCACACGAACAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCTCTGCTCTCTTATGAAAGCGGTGATATATCTGGTGTTCTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCTTTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGGAAAAGATGCATGCAAATTGGAAGAGGCCATGAGAAAGCATTTACCTGAACTTTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACACAGCTTTCTCCTTCTATCCTCAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTCCAAAACCCCGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGATTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCACGGGCATATTGCTATAGAGCTGTACCGGGAGCAGGGGCGCAAGACTTCTATATCCCATGATAAGCTGTTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCCCAATGGGAGCTTAATTTGCTGAAGAAAAACACTTCGGGTAATCTAAAATGGAGAGATGTCTGTGGAAAGGATGGTCTTTTGGCAAAAGCACTCAAGGCACGTATTGAGATGGAGAGAGCAAAAAGGGAATTTCTCTGCAGTTCTTCACAGGCATTAAAAATGGANAATAATTTTGATGCTACAAGTGAAAGGGAATGCAACATCTGCTTTTTTGATTTACACCTATCTGCTGCTGGTTGTCACTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAATTTTGTTCATGCTCTTGGGATTCCAAATTTTTCCTCTTTCGTTATGATATTAGTGAACTAATTATTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTATACAGATGGGCAAAATTAGATCTTGGGTTGGCACTAACTTCTTATGTCTCAGGAGATAAAGAAACAATACTTAAGGAATTGAGATTGCATTCATCCAACTCATCTCATTCTTCCAGAGCCAATGTGAATAAAGAGGTGGCTATGCACCCATCAAATAATTTTATTGAAGATTCTCAATTGATAGATGTTCCAATAGTGGATCAAGCAAATTCAGCAAATAGCAAGGATCAGAGCTATCTTAAACAAAGGAAATCAGCAGAAGTTGTGTTAGCTTTGAGTCACACGAAGGAACCTTTAGCATTTAATCGATCAAAACCTAAATGTGAGGTGGCTAATCGCAAGATCTGTGTTGATAAAAAAGAATCTGTTATTTGCAGATCAAAGCCGAGAATCCCTGGTTGTCAATTGTCTCAAGAGGATTCATCATATGCTTCATCTCTTCCTCTAGCTCAACATGGAGGTGATAAAAGTTCACTTGACAGACATAACAATATTATACTTCTTAGTGACGATGAAGATGATGAAAAGAAGATGTCAGATTCAAATAGAAGGAAAGAACTTTCTCATGTGCCTGCAGGTTCTAAAAATAAAGCAAGCCTGTGTAACAATATAGAAAATACAAGCTTGACCATCCCTGTGACAGATGCTGCTGTGATGGGTGAAAAGGATGCTATTACATTGCCTTGTGAAGATATGAGTTTGAATTCAACTCAGCTTTTGCATGTGAAACAAGAATGTCATGACCAGAGAGGACCAGTTCTAGCTTCTACCCCAGTAGATCTTTCTTTTCATATAGGTATTACTAGTGCAGAATCAGTTAGAAATATTCCAGCTTCTTCAACAGTAGAGGCCAGCGATCATTGTTNGGAAAGTTTGGAGATTTGTCCTCNGAACCCACAACATTCTGGAACTATCAAGGCTAAGAATGAGGATAATCATGAAAAGTTTCGAGGATGTGCCACTTCTAATGTAGCAGACAATGCAAGAGCTGTTAATGGAAATATCTCTTCTGGTCCAAACAATTACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGTATCAACTGCAATGTTGAACCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAGTCATGGTGCAGTAGTCAGGCTATATATCCAAAGGGATTTAGAAGCCGTGTTAGATACATAAGTATCTTAGATCCATCCAGTATGTGTTACTATATTTCAGAAATTCTTGATGGTGGACGTGGCTGGCCTCTATTTATGGTTTCCTTGGAAAACTGTTCCAGTGAGGTCTTCATCCATANGTCAGCAACTAGATGCTGGGAACTGGTAAGAGAGAGAGTGAACCAAGAGATCACAAAACAACATAAGCTGGGAAGAAAGAATCTNCCTCCTTTACAGCCTCCCGGCAGCCTTGATGGCTTTGAAATGTTTGGATTTTCTTCACCAGCAATAGTGCAGGCCATCGAGGCACTGGACCGAAGTCGAGTTTGTAATGAATATTGGGACTCTCGGCCCTACTCTCGGCCTCAAGGGCAGATTTCACAAGCTTACCAAACCAATGTAAATGGTGGTGGTGGAAATGATAAAGGGGTTCTCATGAATCAGCACACGCCCGTTGGAGATGTTGCAGTATTAAGGAGCCTATTTAAAAAGGCCAATGCGGAAGAATTGAACTCGTTGTACAGCATTCTTAGTGACAATAAGCCAGAGGCTGACCGTAATCTAATTGCACAACTTCTTTCAGAGGAGATTCACAAATCCCAACCGCCCTAGGTGATTTTGATTATTTGGACGGAATTATTCATACGCCTAACCCTTTCTTGACATGTAAATTGTAGTTCATATAAGGTTGCACATGCTATTTCATGCAACCTTAATCTTTGGTTTTTTTCTTCTTCACCTAAATGGAGGTTATAGAGAAAGAAAAAGGAGAAAAAAGGAAATAAAATTATAAAAAGGGAAAAGAAAGATTACTTCCCTTTAAAATTTTGTTTATTTCAAGTGGCAGTGGGGATGGAAAGTTATCAAGTGTCA

Protein Sequence

>Glyur000226s00010845.1
MRLLMGTELMRICVKEDNDDFPPVPPGFESYTSFSLERVEDNEKQNDENLTSCSTSASESQSTQVKNDVQFHDTAKVPRSLRRRPWINYGQYENILEEDSDCERLDQNFSSRPCLPKGVIRGCPDCSNCQKVIARWRPEDSRRPNLEDALVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKXIWEGSKFGTRVQRIDKLQNRDSGRXMPRFQSNMKRKKRRCTRMGVDNGSRTGSNAVFCEVERFGFEPGPXFTLEMFQRYADDFKVKYFRNENVSHSSANTNTLNGTLDPSVENIEGEYWRMVESPTEEIEVLXGADLETGVFGSGFPSKSSHVSTSHEQYIKSGWNLNNFARLPGSLLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTSGNLKWRDVCGKDGLLAKALKARIEMERAKREFLCSSSQALKMXNNFDATSERECNICFFDLHLSAAGCHCSPDRYACLDHAKQFCSCSWDSKFFLFRYDISELIILVEALEGKLSAVYRWAKLDLGLALTSYVSGDKETILKELRLHSSNSSHSSRANVNKEVAMHPSNNFIEDSQLIDVPIVDQANSANSKDQSYLKQRKSAEVVLALSHTKEPLAFNRSKPKCEVANRKICVDKKESVICRSKPRIPGCQLSQEDSSYASSLPLAQHGGDKSSLDRHNNIILLSDDEDDEKKMSDSNRRKELSHVPAGSKNKASLCNNIENTSLTIPVTDAAVMGEKDAITLPCEDMSLNSTQLLHVKQECHDQRGPVLASTPVDLSFHIGITSAESVRNIPASSTVEASDHCXESLEICPXNPQHSGTIKAKNEDNHEKFRGCATSNVADNARAVNGNISSGPNNYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIYPKGFRSRVRYISILDPSSMCYYISEILDGGRGWPLFMVSLENCSSEVFIHXSATRCWELVRERVNQEITKQHKLGRKNLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPYSRPQGQISQAYQTNVNGGGGNDKGVLMNQHTPVGDVAVLRSLFKKANAEELNSLYSILSDNKPEADRNLIAQLLSEEIHKSQPP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00226	173019	182045	+

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji
EAR motif-containing Proteins	Jumonji

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000226s00010845.1	PF02375.12	JmjN	151	183	6.40E-17
Glyur000226s00010845.1	PF02373.17	JmjC	389	505	4.20E-46
Glyur000226s00010845.1	PF02928.11	zf-C5HC2	612	663	2.70E-14
Glyur000226s00010845.1	PF05964.9	FYRN	1040	1084	3.50E-09
Glyur000226s00010845.1	PF05965.9	FYRC	1090	1176	4.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.539
SRR1783600	control	9.575
SRR1783602	moderate drought stress	9.614
SRR1811619	moderate drought stress	9.490

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.264
DRR006520	Root Summer glycyrrhizin high producing strain	9.196
DRR006521	Root Winter glycyrrhizin high producing strain	10.948
DRR006522	Root Winter glycyrrhizin high producing strain	10.616
DRR006523	Root Summer glycyrrhizin low producing strain	10.657
DRR006524	Root Summer glycyrrhizin low producing strain	10.575
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.454
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.496

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.575
SRR2868004	Drought Stress (root)	16.170
SRR2967015	Control (root)	15.147

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.258
SRR9715740	Leaf	9.062
SRR9715741	Leaf	11.707
SRR9715739	Root	1.745
SRR9715742	Root	11.542
SRR9715743	Root	9.896

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.759
SRR8749028	MeJA induced 9h	14.362
SRR8749029	MeJA induced 9h	8.662
SRR8749030	Uninduced	10.541
SRR8749031	Uninduced	13.159
SRR8749032	Uninduced	9.589

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.160
SRR8400027	Control - Root	12.096