Gene detail

Gene detail information of Glyur000226s00010840

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16260.1	2.00E-145	RNA binding (RRM/RBD/RNP motifs) family protein
NR	XP_007143970.1	0	hypothetical protein PHAVU_007G117900g [Phaseolus vulgaris]
Swissprot	tr\|Q9AST1\|TAF15_ARATH	6.00E-09	Transcription initiation factor TFIID subunit 15
trEMBL	tr\|V7BDQ2\|V7BDQ2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15964.1}

Sequence

Transcript Sequence

>Glyur000226s00010840.1
GATTTCCCTTTCGTTNCCTGACCCAGCTTCTCTGTTCTCTCTAGAAAGTGCCTTTGTATCATAATCACCATTGTATTGTAAGCAGAAAACCCAGAGATTGAGCCGAAAACGATGGCTTCTGAAAATGGCTACGAGAGCCAGCAACAGCAACCGCAACGTGAAAAGGCTACAGAAGTGGGATGGTATGTTCTCGGAGAGGATCAACAACAGGTTGGTCCTTATGCCTTCTCAGAGTTGCGCGAGCATTTCTTAAATGGATACCTATCCGAAAATACATTTTTGTGGTCTGAAGGAAGAAGTGAGTGGCAGCCCTTGNCCTCAATTTCTGAATTGTGGGCTGAAGTTAACCGCCAGGGACCTGATCCTTCAACTGCAGTGTCTGCCCAAGATGTTGATGAGTTTGAAAAATGGCAAAAGGAGATTCAGGAGGCAGAGGCACAGGTGGAAGGTTCAGAATTCGGGTCCTTTACCGCTGATGTTGGCGGTAGTGTGGCAGGAGCTGATTCCGAGAGACCTTCAACACCACCTGATGGTGAAGACGAATTTACCGATGATGATGGGACTAAATACAAGTGGGNTAGGAAGCTTAGGGTTTGGGTTCCCCAGGATTATACGTCTAGCAGCGCTGATCCTTATGGGGTTGAAGAGATGACCTTCTTGCAAGAAGAGGAAGTTTTTCCAACAGTAACNGATTCTGATGCCTCTGAAAAGGTTGAAGATAGTTCAAAATTGAGTGTTTCTGTGACTTCCTTAAAAGACGAAGCAAATGAAGCAAATAATACCAATGTGGTAGCTGATGGAAAGAGGAAGCTTTCAGATAAAGAAGCTGACAAGAAGGAAGCTAATAAACCTCCTGACAGTTGGTTTGAATTAAAGATCAATACACATGTTTATGTCACTGGGTTGCCTGAGGATGTTACCACTGATGAAGTTGTGGAGGTATTTTCCAAGTGTGGAATTATAAAGGAGGACCCAGAAACTAAAAAGCCTCGTGTGAAGATCTATGTTGATAAAGAGACAGGAAGAAAAAAGGGAGATGCTCTGGTTACATATCTTAAGGAACCATCAGTGGCTCTGGCGATCCAAATTTTGGATGGTACACCTTTTCGGCCTGGTGGTACGACTCCGATGTCTGTCACCCAGGCCAAATTTGAGCAGAAAGGAGACAGGTTTGTATCCAAGCAAGTAGACAATAGAAAGAAAAAGAAATTGAAAAAGGTGGAAGAAAAAATGCTTGGATGGGGTGGTCGTGATGATGCAAAACTTTCAATTCCAACAACTGTTGTCCTTCGCTATATGTTTAGTCTTGCTGAAATGAGGGCTGATGAAAATTTACGCTTAGAACTAGAAGAAGATGTTAAAGAGGAATGTACAAAGCTTGGTCCTGTAGACTCAGTCAAGGTATGTGAGAATCATCCTCAGGGTGTTGTTTTGGTAAAATTCAAGGATAGGAAGGATGCTGAGGGTTGCATAGAATTGATGAATGGAAGATGGTTTGGTGGTAGACAGATACATGCCAGTGTAGATGATGGTTTAATTAACCATGCCTTGGTTCGGGATCTAGAGGAAGATGCCAAGCGACTGGAGCAGTTTGGTGCGGAACTTGAAGGTGAATGAGTTAGTTAATGAAGAATAATATTGCACCAGATTTATGGTTCCTAATAAGTCCATGCCTGGGTGGGATGGGAGTATTGCAAGGTCGCTGAAGCTCATGGATTACTCGGTCATCACTGCTTAGCAGTTTTGCAATGATGTATTAGTTTCTCCTATTGTATCATCGGAAAAAAAAATGAAATTAGAGGAGGAAAGAACTTGCTAATTTGATTTGGCTTGCACATCTTTATTTGGTATATTGTAACATTCCCTACGTGCAGCATCCAAATCATACATATATTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00226	139979	145364	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000226s00010840.1	PF14237.1	DUF4339	24	68	3.10E-09
Glyur000226s00010840.1	PF00076.17	RRM_1	260	332	2.10E-09
Glyur000226s00010840.1	PF00076.17	RRM_1	413	468	2.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.946
SRR1783600	control	10.091
SRR1783602	moderate drought stress	15.581
SRR1811619	moderate drought stress	15.731

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.411
DRR006520	Root Summer glycyrrhizin high producing strain	28.079
DRR006521	Root Winter glycyrrhizin high producing strain	43.495
DRR006522	Root Winter glycyrrhizin high producing strain	42.435
DRR006523	Root Summer glycyrrhizin low producing strain	30.130
DRR006524	Root Summer glycyrrhizin low producing strain	30.215
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.678
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.469

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.059
SRR2868004	Drought Stress (root)	47.713
SRR2967015	Control (root)	49.870

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.968
SRR9715740	Leaf	27.591
SRR9715741	Leaf	37.905
SRR9715739	Root	4.689
SRR9715742	Root	21.247
SRR9715743	Root	20.224

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.002
SRR8749028	MeJA induced 9h	43.016
SRR8749029	MeJA induced 9h	37.869
SRR8749030	Uninduced	29.432
SRR8749031	Uninduced	25.339
SRR8749032	Uninduced	20.181

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.286
SRR8400027	Control - Root	40.356