Gene detail

Gene detail information of Glyur000226s00010834.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02830.1	9.00E-139	zinc finger protein 1
NR	XP_006606433.1	0	PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 [Glycine max]
Swissprot	tr\|Q9SWF9\|ZFNL_PEA	0	Zinc finger CCCH domain-containing protein ZFN-like
trEMBL	tr\|I1NIJ3\|I1NIJ3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G36140.1}

Sequence

Transcript Sequence

>Glyur000226s00010834.1
GGGAGGATGGTTGGTTTGTGGAGAGGAGAGAAGGTTATGTGTGTTATGGGAATGGAAGGTGCAGTGAGAGAGAATTGAAGAAAAGGCATACGAATGAATGAATGAATGAATGGAGAAGCTGTTGCTGCTGCTGAAGAAGCTTAGCCTCTTCTTCTTCTTCTTCTTCTTCTTCTCATGGAATTCGACGCCGCTATTCCCATCTCCCAAGGCCCTCTCTCTCAAGATTCACTGTGGATGATAAAATTGAGGTCAGGTGAAACAATGGAATCTGGACCTTATCCACAGCGCCCAGGGGAGCCAGATTGTTCATATTACATCAGGACAGGCCTTTGTAGATTTGGGGCAACATGTCGATTCAATCATCCTCCTAACAGGAAACTGGCTATTGCCACTGCAAGGATGACTGGTGAGTTCCCAGAAAGAATAGGCCAACCAGAATGTCAGGCATGTACTAATTTCTCAATGCATTCATTACATGCATATTTCTTATTTATGTGTTTGATCTGGGAATCTGCTCTTTTTAAGTACTATCTGAAGACAGGAACTTGCAAATTCGGAGCCACATGCAAATTTCATCATCCTAGAGACCAGGCTGGGATTGCTGGAAGAGCTGCCTTAAATATTTTAGGCTATCCNCTCCGCCCTAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCTAGTAATATGATGCTTTCATTACGGGGTTCTACTGTTTACCCTACTGTCCATTCTCCAACCACACCAGGTCAGCAGTCATATGCAGGAGGAATTGNAAATTGGTCTAGGGCATCTTATGTTCCTAGTCCACGCTGGCAAGGTCCTTCAAGTTATACACCTTTAATTCTACCTCAGGGAGTGGTTTCAGTGCCTGGATGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTACTTCAGACAGTCCGCAACAATCAATGGGAAATAGTCAAACATATGGAACTTCTCGCCAAGGTGAATTAGAAAATGCTGGATCACATGGGCCATATTCTCAATTCCGTGCTGGAACTATTCCTGTAGGGTTTTATNCATTGCAGAGAGAGAACATGTTTCCCGAGAGACCCGGTCAGCCTGAATGCCAATTCTACATGAAGACGGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCACGTGAGAGGCTAATTCCTACTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGTCCTGGAGAGCCTTTGTGTGTCTTCTATTCACGCTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCGCCTATAATTTATCTGCATCGCCCTCAGCTGATGNCCCGGGCAGGCATCTGTTAGGATCTTCGTCGGGAACTGCTGCACTAAATTTATCGTCAGAAGGACTTGTTGAGTCAAGCTCAGCAAAGCCCAGGAGGCTNTCAGTATCGGAGAAAAGACAGATTCCTTCTGGTGATGATGACATTGATGATGATGGCTGATGTCTCTTGGAAATGGATCATTTGGCTTTTACAATTTTTTTGAGGGGAGAAACGAATAATCTGTAAATTGATTTTTCCATTGCTGGAAATGTACAGAGGTCATGTCAGGTTGATTCTGTCAAATGTGAAGTTAATTGCAGCTGACAGATTCAATTGTTCTGNATTTCATGTTGCCTCATTGTATAAATTTAAGNAAATATTGTCACATTTGGTCTAACCCAACGNGAACAATCCTTCTATTCTTAAGCCACTANTTCTTTCCAATTTAATTTTCCCATTATGTAAAAAACCTCTTTTTGGAAATCTGCAATGATCAAATTTTCCCTCTGAATATTTATTGGATGCAGGTTTGAAACTCATTTCAAAGCCTTTACTTTCTCAATACAGTTGGGCCTATGGCATCTACTGAGCCAGCATCATCATCTACACCTTTCTACTTTTCATGTTCTTGTACATTCTTACCAGAATTTAGCAGAAATTGAATGAAGTTGACAATGATTTTATATATCTGTATAAATTACAACAACTGCTGGAATGTAATTTTATTCTGTGCTTGTATTTTCTCCTGATTTATTAACTCTGTCTATGGTGATTGTCCTTGACATAGTTTGNTTTGCAGAAGTTGAGGGGTAGAAAGGCTTACTTAACTGTGAATATTGGAGGCAGTAAAGCAGAACCTTTTTGATATACTTCTTAGNTCTTCCCAGATTTCAAGCGCCTCAACGCGAATGGGACTTTTGTTCTTGTANAGATTCAGGCTACACCAATTAAAGGTGGGTGGATTGCTGGACCCTGGATGGTCTTTTCTACTTGGAATTGGGTTTGCAATTCACATGCAATAAATCCGTAGTATGGAATTTAAATCTTTTATGAAGGCTTTAGGAAGTAGCATTTCTGTTGCTGAAGATAACGTGTATTGTATTGCTCATTTTATGATTAAACTTATGCAGGTACTTNGTGGATTCTTTCTTTCTTTCATGGTTTTTCTGATTTATAGATTGCTCATAACATTGTATTGAGAGTTCACTGTGCTAGTTTGCACAATGCAGTATAACTGAAAAGCAGAAATTTATTGGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00226	109461	116159	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000226s00010834.1	PF00642.19	zf-CCCH	39	65	5.20E-09
Glyur000226s00010834.1	PF00642.19	zf-CCCH	117	137	5.80E-08
Glyur000226s00010834.1	PF00642.19	zf-CCCH	159	183	6.30E-10
Glyur000226s00010834.1	PF00642.19	zf-CCCH	318	344	9.90E-10
Glyur000226s00010834.1	PF00642.19	zf-CCCH	364	390	8.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.242
SRR1783600	control	11.266
SRR1783602	moderate drought stress	7.970
SRR1811619	moderate drought stress	7.978

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.527
DRR006520	Root Summer glycyrrhizin high producing strain	10.243
DRR006521	Root Winter glycyrrhizin high producing strain	20.378
DRR006522	Root Winter glycyrrhizin high producing strain	19.960
DRR006523	Root Summer glycyrrhizin low producing strain	14.577
DRR006524	Root Summer glycyrrhizin low producing strain	14.519
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.912
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.224

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.827
SRR2868004	Drought Stress (root)	31.921
SRR2967015	Control (root)	23.524

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.349
SRR9715740	Leaf	40.737
SRR9715741	Leaf	38.545
SRR9715739	Root	12.203
SRR9715742	Root	11.020
SRR9715743	Root	10.648

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.269
SRR8749028	MeJA induced 9h	22.243
SRR8749029	MeJA induced 9h	29.098
SRR8749030	Uninduced	24.452
SRR8749031	Uninduced	39.037
SRR8749032	Uninduced	34.379

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.433
SRR8400027	Control - Root	20.888