Gene detail

Gene detail information of Glyur000226s00010830.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G65650.1	8.00E-138	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
NR	XP_003556440.1	0	PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5 [Glycine max]
trEMBL	tr\|I1NIJ5\|I1NIJ5_SOYBN	0	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU361215}

Sequence

Transcript Sequence

>Glyur000226s00010830.1
ATGAAGTTGTGGTCGGTGGAACGACCATTGAACACCAGCGACCCTGACAACGGTTTTCTTCTCGAGCTATCTCCTCTCCTCAACCCTCGATCTGGAAGCGGTGCCTCCAACTGCTTCTCCCTCGAAATCGGAAGGTCCGTCTTGTTCTACCGTCACGATGTTGTTCCCTACATCGACGGCCAACCCAACGACTCCCTACGGATCCACGACATGCTACTGCGACGACGAGCTCCTCTTGCCGATGGTGGTTATGGTCCACCAAAGAAGAAGGAAGCAGCGGGCGAAGACGCAATGACAAGGGATGGAGCTTGNTTCCTACAATTCGGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCGGTGTATTTACAGAACTTATTCAGCAAATGCAAGTGAAAGGTGTACAGGTTGAAGAACTGTATTCGTTGGACCTTGAATCTCTCGACAGCCTTAGGCCTGTATATGGATTGATTTTTCTTTTCAAATGGCGTCCAGGAGAAAAGGATGACCGTGTTGTAATCAAAGATCCCAATCCTAACTTGTTTTTTGCCAGCCAGGTAATTAATAATGCTTGTGCAACCCAGGCGATCTTGTCTATTCTTATGAATTCACCAGATATTGACATTGGTCCAGAGTTGACAAAACTGAAAGAATTCACCAAGAACTTTCCTCCTGAACTCAAAGGTTTGGCTATCAACAATAGTGAGGCCATTCGAACAGCCCATAATAGCTTTGCAAGGCCAGAACCTTTTGTCCCTGAAGAGCAAAAGGTTGCTGGAAAAGATGACGATGTTTACCATTTTATAAGTTATCTACCTGTTGATGGAGTACTGTATGAGCTTGATGGATTAAAGGAGGGTCCTATCAGCCTTGGTCAGTGTGCTGGTGAGCAAGGTGATATGGAATGGCTNAAGATGGTGCAACCTGTGATCCAGGAACGCATTGAAAGGTATTCCCAAAATGAGATAAGGTTTAATCTCCTAGCAATCATCAAGAACAGGAAAGAGATGTATACTGCCGAGCTGAAGGAACTTCAGAAGAGAAGGGANCGTATTTTGCAGCAGCTGGCTGCATCGAAGTCAGAGAGACTGGTGGACAATAGCAATTTTGAGGTACTGAACAATTCTCTCTCTGAAGTGAATGCTGGGATTGAAGCTGCCACTGAGAAGATCTTAATGGAGGAAGAAAAATTCAAAAAATGGAGGACAGAAAATATCCGTAGGAAACACAATTACATACCCTTTTTGTTTAACTTTTTAAAGATTCTTGCTGAGAAGAAGCAATTGAAGCCCCTCATTGAGAAGGCCAAGCAGAAAACGAGCAGCCCTCAGTGAAGAATGTTGTCTATTTATACAACTTTTTTGTGTGGATTTTCTCCAGATAAGTATGCCCATATGTATCATGTTGCACTTGATTATATTTTTAGCACTCTGTTGAGTACTGATGCACATGCTTTTTCCGATCCAAGGTTACTCTACCCTGTTTAATGTTCGCCTTGCTAGTGAATCATTCACCTGGATTTAATAATATATTTTGTCAGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00226	91878	95631	-

Gene family

Gene family	subfamily
Ubiquitin Family	UCH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

cellular_component
GO:0005622 intracellular

molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000226s00010830.1	PF01088.16	Peptidase_C12	112	318	2.00E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.156
SRR1783600	control	37.094
SRR1783602	moderate drought stress	22.895
SRR1811619	moderate drought stress	22.995

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.044
DRR006520	Root Summer glycyrrhizin high producing strain	46.283
DRR006521	Root Winter glycyrrhizin high producing strain	31.366
DRR006522	Root Winter glycyrrhizin high producing strain	30.741
DRR006523	Root Summer glycyrrhizin low producing strain	34.739
DRR006524	Root Summer glycyrrhizin low producing strain	35.169
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.745
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.835

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	58.981
SRR2868004	Drought Stress (root)	53.698
SRR2967015	Control (root)	49.769

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.483
SRR9715740	Leaf	44.686
SRR9715741	Leaf	49.402
SRR9715739	Root	6.168
SRR9715742	Root	23.164
SRR9715743	Root	22.767

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	75.343
SRR8749028	MeJA induced 9h	37.069
SRR8749029	MeJA induced 9h	48.024
SRR8749030	Uninduced	26.142
SRR8749031	Uninduced	24.067
SRR8749032	Uninduced	19.752

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.934
SRR8400027	Control - Root	49.797