Gene detail

Gene detail information of Glyur000226s00010828

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10770.2	5.00E-05	Single-stranded nucleic acid binding R3H protein
NR	XP_003536157.1	0	PREDICTED: uncharacterized protein LOC100801478 [Glycine max]
trEMBL	tr\|I1LBV3\|I1LBV3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G31320.1}

Sequence

Transcript Sequence

>Glyur000226s00010828.1
GAAAAAATGGGTGGGCTACTCAACTCAAACACGCAGCCATCACTTCAGCGAATCTGAAAGCTGAATTGCAAAGTTGGATGCCCAAGTTTTGTAATTGGGAACCTCCTGAACCCTAAAGCCTCTGACTTTGTTCAACCCTTCAATATGAGTATGACCCAATTCGCCATGGTTGAGGAGTTGGCCTTTCTTGTGAAGGACAATCTTCCTTGCAAGCATCTAGTTCTCACAATGGAAGAAGTCTTAGTTAACTTTATTGAGGCTGATGACACAAGTTCAGATGGGATCTTGGAATTAGAGCCAATGAACTCTTACAACCGTCTTCTCTTACATCGCCTTGCTGAGATATTTGGTTGTATAACTGGTGCCAGGTTTGCACATGAATCTGTTGGTGAAGGAGAAGATCGCCATTTGATTCTGGAGAGATGTCCAGATACTTCTATACCTCCAATTCTTGTTAGTGATATCCTATGGAAGTATGATGATGAACCTCAATCTTTGACTACATCACACCAAATATTAAGGAGAAAAGAAGCCTCTCCTGTCTCACNGACAAATACAGCATCCATTCAGCAGTCACTGGAGGAAAGAAAAGCAGCTTATTTAATTGCTCGTGAGCGGATTTTTTCTATGAATTTGGAAGAGGCAAAAGAGCCTGATGAACAAAAGCCACGAACTGTGCCTGTGGTTGCGCGTCGAATGATTGCGCATGCACTGGGTCAAAGAATTGACCATAAAAAGAATCAGAGTGACTTGGTCAGTGATAGTATGAAGGAAAGAGTGCTCACAGATGAATTAAATACTCAAGATAAGAATTGTGAGAAGTCTGATCTCACGAAAGACTCTGAAGAGTCTTCAAGAAGGAACACAAACAACAGCAGAACAAGAAACACTAGCAGTTCTAATGCAGCCTCACTCAATAAAAGGAATGATCAAACACCAGTTGACAAACAATTCTGTGAAGATGGAAAACAAGGGCAAAGTGCAAGTAAAGACTACATGAAAAAGGAGCATTTAGGAGCTGCAAAGAGAATGTTTGCTCATGCTCTTGGGGTACACTCTGGGAAGGATGGTTCTGTTCCTAGAAGTAGAGTTGGAAAAAATAAATAAGAATTAGCACAGAAGGTTGTAAAGTCTTTAAAGCAGAATGGTATTTGGTTGCTCCTAATGTACCTTGGCAGGTTCTCGTAAGGTTTCAATCACAATGAGGGAGATGAGTAATGACTTAAAATTCTGATACATTAATATCAGGTGATTCATGCAAATTGCTTAGTTCTTCCGTGGTCGTGCTGGAGTAACTTGACTAGCAGCCGAGTCAAGAATGAACTATCCAGAATCATGTTTGACCTGTTTNGGCATAAGGATGAAGCTGAGGGAACACCAGTTGGTTATGTTGTTTAAATGTTGATATAAGGCAAGACATGCAGTACCAGTTTCATTCTGCTGTGTTTAAATGTTATTTAAATGTTGGCAATGTTGTTATGTATATATAGATTATTCGAAACTACAAATTTGTTCCAAACTTGTTCTCCTTGTTTCTCTTTCCAAATTGGAAATTGGGGGGGACCAAAATTGTGGTTTGACTGAGGTCACTGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00226	73646	77186	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000226s00010828.1	PF01424.17	R3H	26	93	4.80E-13
Glyur000226s00010828.1	PF12752.2	SUZ	122	161	8.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.692
SRR1783600	control	8.678
SRR1783602	moderate drought stress	12.379
SRR1811619	moderate drought stress	12.147

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.086
DRR006520	Root Summer glycyrrhizin high producing strain	16.694
DRR006521	Root Winter glycyrrhizin high producing strain	21.625
DRR006522	Root Winter glycyrrhizin high producing strain	21.077
DRR006523	Root Summer glycyrrhizin low producing strain	18.009
DRR006524	Root Summer glycyrrhizin low producing strain	18.290
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.580
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.907

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.876
SRR2868004	Drought Stress (root)	32.843
SRR2967015	Control (root)	33.369

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.455
SRR9715740	Leaf	27.684
SRR9715741	Leaf	22.732
SRR9715739	Root	1.270
SRR9715742	Root	5.493
SRR9715743	Root	5.304

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.499
SRR8749028	MeJA induced 9h	40.133
SRR8749029	MeJA induced 9h	47.965
SRR8749030	Uninduced	37.538
SRR8749031	Uninduced	92.402
SRR8749032	Uninduced	58.417

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.332
SRR8400027	Control - Root	25.193