Gene detail information of Glyur000226s00010820 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02360.1 | 4.00E-60 | phloem protein 2-B10 |
| NR | KHN04971.1 | 3.55E-142 | F-box protein PP2-B1 [Glycine soja] |
| Swissprot | tr|Q9ZVQ6|P2B10_ARATH | 1.00E-72 | F-box protein PP2-B10 |
| trEMBL | tr|K7N4Z3|K7N4Z3_SOYBN | 2.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G36226.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00226 | 45235 | 50248 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000226s00010820.1 | PF00646.28 | F-box | 13 | 55 | 1.20E-08 |
| Glyur000226s00010820.1 | PF14299.1 | PP2 | 105 | 289 | 3.00E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.933 |
| SRR1783600 | control | 8.807 |
| SRR1783602 | moderate drought stress | 13.827 |
| SRR1811619 | moderate drought stress | 13.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.616 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.510 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.415 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.517 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.340 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.777 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 56.314 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 55.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.592 |
| SRR2868004 | Drought Stress (root) | 45.644 |
| SRR2967015 | Control (root) | 55.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.984 |
| SRR9715740 | Leaf | 59.035 |
| SRR9715741 | Leaf | 59.336 |
| SRR9715739 | Root | 6.901 |
| SRR9715742 | Root | 18.826 |
| SRR9715743 | Root | 16.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.429 |
| SRR8749028 | MeJA induced 9h | 116.703 |
| SRR8749029 | MeJA induced 9h | 92.564 |
| SRR8749030 | Uninduced | 64.772 |
| SRR8749031 | Uninduced | 298.977 |
| SRR8749032 | Uninduced | 289.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.050 |
| SRR8400027 | Control - Root | 20.878 |