Gene detail information of Glyur000226s00010819.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80110.1 | 4.00E-49 | phloem protein 2-B11 |
| NR | KHN14786.1 | 2.37E-130 | F-box protein PP2-B10 [Glycine soja] |
| Swissprot | tr|Q949S5|P2B11_ARATH | 4.00E-67 | F-box protein PP2-B11 |
| trEMBL | tr|G8A220|G8A220_MEDTR | 1.00E-124 | Phloem protein 2-B11 {ECO:0000313|EMBL:KEH43703.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00226 | 41055 | 44147 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000226s00010819.1 | PF12937.2 | F-box-like | 4 | 46 | 1.20E-06 |
| Glyur000226s00010819.1 | PF14299.1 | PP2 | 95 | 126 | 1.00E-10 |
| Glyur000226s00010819.1 | PF14299.1 | PP2 | 169 | 307 | 2.60E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.286 |
| SRR1783600 | control | 8.459 |
| SRR1783602 | moderate drought stress | 13.432 |
| SRR1811619 | moderate drought stress | 13.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.559 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.440 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.920 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.841 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.042 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.966 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.579 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.786 |
| SRR2868004 | Drought Stress (root) | 3.371 |
| SRR2967015 | Control (root) | 4.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.915 |
| SRR9715740 | Leaf | 1.869 |
| SRR9715741 | Leaf | 1.869 |
| SRR9715739 | Root | 9.122 |
| SRR9715742 | Root | 6.858 |
| SRR9715743 | Root | 7.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.879 |
| SRR8749028 | MeJA induced 9h | 10.649 |
| SRR8749029 | MeJA induced 9h | 12.172 |
| SRR8749030 | Uninduced | 5.790 |
| SRR8749031 | Uninduced | 8.008 |
| SRR8749032 | Uninduced | 8.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.807 |
| SRR8400027 | Control - Root | 9.272 |