Gene detail

Gene detail information of Glyur000225s00014754

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56330.1	4.00E-118	N2,N2-dimethylguanosine tRNA methyltransferase
NR	XP_004502846.1	0	PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase-like isoform X1 [Cicer arietinum]
COG	YP_003887149.1	4.00E-58	N2N2-dimethylguanosine tRNA methyltransferase [Cyanothece sp. PCC 7822]
trEMBL	tr\|V7AWF1\|V7AWF1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW09615.1}

Sequence

Transcript Sequence

>Glyur000225s00014754.1
ATGTTGACTCTCGCTCTTTCCTTTTCTCCTCCTCACTTCCCGCAACACCCGTTTCCTCAATTTCAGTGTCACTGTTCCAAAGTGTCAACCTTTGTGCCCGAAAAAAAGGGGTACCAAACCGAAAGGGGTTTGGAGTTTGATACCGGCGGCGCATTTTACCGGCGAGAGAGTGCCACCGGGAGAGACCTCGGAGTTCTCGCAGCTTCGCTGCAAAAGAAGGTCAACGGAAGCTTGCGTGTTCTCGATGCTCTGTGTGGTTGTGGGATTCGGTCGTTGCGGTACCTGAAGGAATCTGAAGCGGATTTTGTTGTGGCCAATGATGGAAATGAGTGCTATGGAAGCACCATTGTGGAGAACTTGTCGAGGGTTTCGGGGAGTGAAGAGAATAGATGGGTGGTTACTCATTTGGAAGCTAATCGTGTTATGACTGATTATTATCTGCAGAAGAGTTTCTTCGATTTCATTGATGTTGATTCGTTTGGGAGTGATTCCTCTTTCTTGCGTTCTTTAGCTGCATATGGAGCCTTTGTGCGCCCTTTGCCATATTCGAATGAGATTGGTTTGCGAATGCTTATAGGTGGGGCTGCAAGGGAAGCTGCTGTGTTGGGGTACCATATAACTCCCTTATTTTCGTACTATGCTTATCATGGACCTGTTTTCAGAGTCTTGCTCAGATTAAATCGTGGGAAGATTCATGACAGCATTATGGTTTCATTGGATATTGCCACCAGTGTGGAAATTCCCATGAGTTTTCTTGGGATCAACTTGGTTTCAAAATCCCTTCAGGTGTCAGGACCTCTTTGGACAGGGCCTCTTCATGATGCTGCATATCTTATGGACATGTTAGATCTGGCCAAGCAGTGGGGATGGATTGGTTGTGACGGTAAAGACAGTCTTGAAAAGCTTATAAAACTGATGGTGGATGAAAGTGACCCCAAGTTGTCATTTGGGTATATCAAGATGGATGAGATGGCAAGTCGTGCAAAAATTAATTCTCCACCTCTGAAGACATTGATGAGCGCCATGCACCAGAAGGGTTATGCTGCTAGCAGGTCTCACATAGCCACAAATGCAATCAAGACAAATTGCCTCATGACAGAATGCATTAGCATAGCCAAAGAACTACTGCAGGTATCTGTCTCTTGATGATTTGGGCGCAGCTGAAGGTTCCTCTGGCNGTAAAACCACATTCACAATGCCGTCACAGCAAACTGAGCATTTGTTAATAATGCTCACAAGTGTTGAAGGTCATGTCTACTTTCTTGGTTATATCAAGTTTTGTTCCCTAACATCTACAATCTAATATGGATATGCCCTAATAGTTCTTTTATAATTTTAGGGAAAGTTTAGGCAAATAGCTTAATTAAGCACTTATTAAAGAAGTGATTATCATATAAGTGGCTGCTTTTATAATCNAAGAGAGGATGTAGTTAAANTGTGTTCATATAAGTTATAAGCTGTTTTGATAAGCTATTCTGAAGAGTTTATGAAAATAAGCTGTTTATGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00225	214016	217348	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008033 tRNA processing

molecular_function

GO:0003723 RNA binding

GO:0004809 tRNA (guanine-N2-)-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000225s00014754.1	PF02005.11	TRM	51	169	2.30E-19
Glyur000225s00014754.1	PF02005.11	TRM	170	371	8.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.379
SRR1783600	control	3.531
SRR1783602	moderate drought stress	4.227
SRR1811619	moderate drought stress	3.984

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.397
DRR006520	Root Summer glycyrrhizin high producing strain	5.498
DRR006521	Root Winter glycyrrhizin high producing strain	3.372
DRR006522	Root Winter glycyrrhizin high producing strain	3.482
DRR006523	Root Summer glycyrrhizin low producing strain	2.964
DRR006524	Root Summer glycyrrhizin low producing strain	2.830
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.804
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.507

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.047
SRR2868004	Drought Stress (root)	6.079
SRR2967015	Control (root)	6.688

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.424
SRR9715740	Leaf	16.214
SRR9715741	Leaf	16.297
SRR9715739	Root	3.113
SRR9715742	Root	6.647
SRR9715743	Root	6.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.173
SRR8749028	MeJA induced 9h	3.844
SRR8749029	MeJA induced 9h	1.575
SRR8749030	Uninduced	1.712
SRR8749031	Uninduced	1.244
SRR8749032	Uninduced	0.802

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.653
SRR8400027	Control - Root	8.461