Gene detail information of Glyur000225s00014740 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79540.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004491150.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Cicer arietinum] |
| Swissprot | tr|Q9SAJ5|PP133_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g79540 |
| trEMBL | tr|G7K9D6|G7K9D6_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:AES94779.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00225 | 170810 | 173074 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000225s00014740.1 | PF01535.15 | PPR | 105 | 131 | 0.0039 |
| Glyur000225s00014740.1 | PF13041.1 | PPR_2 | 136 | 182 | 3.50E-14 |
| Glyur000225s00014740.1 | PF13041.1 | PPR_2 | 203 | 252 | 6.10E-17 |
| Glyur000225s00014740.1 | PF01535.15 | PPR | 278 | 298 | 0.93 |
| Glyur000225s00014740.1 | PF13041.1 | PPR_2 | 308 | 357 | 7.60E-14 |
| Glyur000225s00014740.1 | PF13041.1 | PPR_2 | 379 | 427 | 9.20E-17 |
| Glyur000225s00014740.1 | PF13041.1 | PPR_2 | 496 | 544 | 2.70E-18 |
| Glyur000225s00014740.1 | PF01535.15 | PPR | 640 | 664 | 0.017 |
| Glyur000225s00014740.1 | PF01535.15 | PPR | 677 | 701 | 0.048 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.058 |
| SRR1783600 | control | 1.230 |
| SRR1783602 | moderate drought stress | 1.273 |
| SRR1811619 | moderate drought stress | 1.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.403 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.383 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.998 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.065 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.778 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.881 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.429 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.002 |
| SRR2868004 | Drought Stress (root) | 3.804 |
| SRR2967015 | Control (root) | 3.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.691 |
| SRR9715740 | Leaf | 3.654 |
| SRR9715741 | Leaf | 2.237 |
| SRR9715739 | Root | 0.396 |
| SRR9715742 | Root | 2.323 |
| SRR9715743 | Root | 2.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.326 |
| SRR8749028 | MeJA induced 9h | 2.325 |
| SRR8749029 | MeJA induced 9h | 0.885 |
| SRR8749030 | Uninduced | 1.053 |
| SRR8749031 | Uninduced | 0.399 |
| SRR8749032 | Uninduced | 0.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.247 |
| SRR8400027 | Control - Root | 2.929 |