Gene detail information of Glyur000225s00014739 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40600.1 | 2.00E-50 | appr-1-p processing enzyme family protein |
| NR | XP_007161504.1 | 5.81E-88 | hypothetical protein PHAVU_001G074800g [Phaseolus vulgaris] |
| COG | YP_006808358.1 | 2.00E-32 | RNase III inhibitor [Nocardia brasiliensis ATCC 700358] |
| trEMBL | tr|V7CVU4|V7CVU4_PHAVU | 2.00E-88 | Uncharacterized protein {ECO:0000313|EMBL:ESW33498.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00225 | 170347 | 176313 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000225s00014739.1 | PF01661.16 | Macro | 71 | 142 | 3.70E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.155 |
| SRR1783600 | control | 9.893 |
| SRR1783602 | moderate drought stress | 21.282 |
| SRR1811619 | moderate drought stress | 20.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.023 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.516 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.506 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.578 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.177 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.315 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.986 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.667 |
| SRR2868004 | Drought Stress (root) | 15.805 |
| SRR2967015 | Control (root) | 17.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.385 |
| SRR9715740 | Leaf | 9.117 |
| SRR9715741 | Leaf | 7.290 |
| SRR9715739 | Root | 12.561 |
| SRR9715742 | Root | 11.532 |
| SRR9715743 | Root | 11.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.465 |
| SRR8749028 | MeJA induced 9h | 7.981 |
| SRR8749029 | MeJA induced 9h | 6.302 |
| SRR8749030 | Uninduced | 3.036 |
| SRR8749031 | Uninduced | 1.261 |
| SRR8749032 | Uninduced | 2.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.766 |
| SRR8400027 | Control - Root | 15.548 |