Gene detail

Gene detail information of Glyur000225s00014738

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10940.1	1.00E-111	dual specificity protein phosphatase (DsPTP1) family protein
NR	KEH35573.1	7.12E-178	dual specificity phosphatase domain protein [Medicago truncatula]
COG	YP_007175180.1	5.00E-10	protein-tyrosine phosphatase [Caldisphaera lagunensis DSM 15908]
Swissprot	tr\|Q9SRK5\|LSF2_ARATH	3.00E-139	Phosphoglucan phosphatase LSF2, chloroplastic (Precursor)
trEMBL	tr\|A0A072V2I1\|A0A072V2I1_MEDTR	3.00E-178	Dual specificity phosphatase domain protein {ECO:0000313\|EMBL:KEH35573.1}

Sequence

Transcript Sequence

>Glyur000225s00014738.1
GAAACAGACAAAACAACACAAGAGAAGCGAGGAGAGATGGAAACTGTGAGTAACGTTGGCTTCGCTTCAGTATTCAGAGCCCCTTTGAAGACGCAGCAGCTATTACTCTCAAATCAAAGGAAACATAAATCGCCATGCAGTTTCATGATTCCTCCTAATCACTCCGTTAGGCGGAGCCGAATGATCTGTTGCAGCAATAAGGTATCAGAAAGTGGGATCCAGGAGAAGCCAGCCACGAGCAACAAGAGGGCCTCTAAACCCAAGGACAGGATGGAAGAATACAATATCGCTATGAAGAGTATGATGAGGAACCCTTACGAGTATCACCACGATCTGGGTATGAACTACACTGTTATAACTGACAATTTGATTGTGGGGTCCCAACCACAGAAACCTGAAGACGTAGATCACCTTAAAAAGGAAGAAGGTGTGGCGTACATTCTAAACTTGCAACAGGATAAGGATGTTGAATATTGGGGAATAGACTTGCAGTCAATAAAAAGAAGGTGCCGTGAACTTGAAATTAGGCACATGAGGAGGCCGGCAGTAGACTTTGATCCGAACTCTTTGCGAAATGAGCTGCCTAAAGCGGTCTCATCCTTGGAATGGGCAATTTCTGAGGGAAAAGGAAGGGTTTATGTGCATTGCACTGCAGGACTTGGAAGGGCTCCAGCAGTGGCAATTGCTTATTTGTTCTGGTTTTGTCCCATGAATCTAAATACAGCATATGACATGCTAACTTCAANGAGACCCTGTGGACCGAATAAAAAAGCAATACGCGGAGCTACTTATGATTTAGCTAAGAAGGATCCATGGAAGGAGCCATTCGAGAGTCTTCCAGACAATGCTTTTGAGGACATAGCAGACTGGGAGAGGAACTTGATTCAAAATCGTGTCCGTTCTCTTCGTGGAACTTGACAAATTAAGTTTCTACTTGTTGCAGAGTTGGTGCAGAGATGCCATGATACTGCTCAAAACTGGAGACTTTTTCAAGCATATTCATAAAGAGACTTTTTCAAGCATATTCATAAAGATATATGCACATAGCTTGTAAAGCGTACGAAATATTCGGTGTAGTATTGATTGGCAAATAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00225	165781	168464	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006470 protein dephosphorylation

GO:0016311 dephosphorylation

molecular_function

GO:0008138 protein tyrosine/serine/threonine phosphatase activity

GO:0016791 phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000225s00014738.1	PF00782.15	DSPc	128	253	5.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.813
SRR1783600	control	44.304
SRR1783602	moderate drought stress	25.353
SRR1811619	moderate drought stress	25.087

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.226
DRR006520	Root Summer glycyrrhizin high producing strain	22.983
DRR006521	Root Winter glycyrrhizin high producing strain	14.390
DRR006522	Root Winter glycyrrhizin high producing strain	14.042
DRR006523	Root Summer glycyrrhizin low producing strain	25.671
DRR006524	Root Summer glycyrrhizin low producing strain	26.008
DRR006525	Leaf Summer glycyrrhizin high producing strain	75.360
DRR006526	Leaf Summer glycyrrhizin high producing strain	74.493

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.850
SRR2868004	Drought Stress (root)	16.785
SRR2967015	Control (root)	20.108

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	108.922
SRR9715740	Leaf	140.820
SRR9715741	Leaf	120.733
SRR9715739	Root	2.977
SRR9715742	Root	13.724
SRR9715743	Root	11.702

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.372
SRR8749028	MeJA induced 9h	17.614
SRR8749029	MeJA induced 9h	13.648
SRR8749030	Uninduced	18.444
SRR8749031	Uninduced	5.842
SRR8749032	Uninduced	4.159

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.099
SRR8400027	Control - Root	47.998