Gene detail

Gene detail information of Glyur000225s00014730

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21150.1	1.00E-139	XAP5 family protein
NR	XP_003630928.1	0	Protein XAP5 CIRCADIAN TIMEKEEPER [Medicago truncatula]
Swissprot	tr\|Q8H110\|XCT_ARATH	0	Protein XAP5 CIRCADIAN TIMEKEEPER
trEMBL	tr\|G7LAJ6\|G7LAJ6_MEDTR	0	XAP5 circadian timekeeper {ECO:0000313\|EMBL:AET05404.1}

Sequence

Transcript Sequence

>Glyur000225s00014730.1
GCAGGAGCAGCGGCCGGTGTCCCTGTTTGTCTCTGAAGGCAAGCACGGTCAGCGATTCGTATTTCGGCAAATTTGCTTTCATTCTGCGGTGATTAAGGTTCATTTATTGCAGGAAGAAAGCATTGCATTTTGTTGAGGATTTTGATTTCAAGAGAGAGAGAGGGGAAGATGTCAGGTATGGGAGATGGGTATGTGGGCACTGCCCAAGATGCAGTTCGGATCCGACGGCTGGAGAAACAAAGAGAAGCTGAGCGTCGCAAAATCCAAGAGCTCAAAACCAAGTCGGCCTCCGCCAAGGGCCAGCCCGGTCTCCTCCAATTCGGCTCCAGCACTTCCGAGATTCTTGAGACTGCATTTAAGAAGGAAACTGTCGGTCTGGTCACCAGAGAGCAATATGTCGAGAAGAGGGTTACTATTCAGACCAAATTAGAGGAGGAAGAGAAGGAGAAGCTTCAGAAGCAACAACAAGAGGAGGAGGAGCTTCAACTACAAAAGCGCAAAAAAAGGAAGATAAAGGGAAATTCTCGATTGTCATTTGCTGAGGATATTGACAATGATGCTCAGGAGGAGGAACCACATCATAATAATCTGGAAACAAGTAGACTACACCATGGTAAGCTTGGTAAAGACCCCACCGTTGAAACTGGCTTTCTACCTGACAGTGAGCGAGAGGCTGAGGAGCAAGCTGAACGTGAAAGGCTGCGCAAACAGTGGGTTCGTGAGCAGGAGCAAATTCGAAATGAGCCTCTTGAAATCACATACAGCTACTGGGATGGAACTGGCCACAGGCGTGTGATTCAGGCAAGTAAAGGCGGCCATGTACGCAAGGGCGACACCATAGGAGAGTTTCTTCGAGCAGTCCAACAGCAACTTGCTCCTGAATTCCGAGAGATTCGAACAACCTCAGTAGAAAATTTGCTGTATGTAAAAGAAGACCTTATCATTCCTCATCAACACAGCTTCTATGAGCTAATTGTGAACAAAGCGAGAGGCAAAAGTGGACCGCTTTTTCATTTCGATGTGCANGAGGATGTACGAACCATTGCTGATGCCACTATAGAGAAGGACGAGTCTCATGCTGGAAAAGTTGTGGAAAGGCACTGGTATGAGAAGAACAAGCATATATTTCCTGCTTCAAGATGGGAGATATATGATCCAACCAAGAAATGGGAACGTTATACCATCCATGGAGATTGATTTGAGGCTGCCAAATAGCTTTATTTGGATTTGCTGCTTGACCTTTTGATCTGGTCATCAGCTGAGATGATTATGCTTCCATTCGCACCTTGATGGTGTTGGTTTATTATATTTGGTAGTTAGTAACAATTATTAAGGGATACACACAATTTTTTATTTATTTATTCTGGTTGCGACCAACCTTATTTCTTCTGAGTGACAGAATTGGAACAGCCTTTAATAGTGTGTTTGATAGTCTATTCCATCTCAGCCACTCTTGGACTTATTTAAAGTATAAACTACAAAGATGCATGTCAAAAAATTATTTTCTGTGTAAAAAGAGTTGTAGCGGACAAAATTGGCTCGTGGTGTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00225	112889	117465	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000225s00014730.1	PF04921.9	XAP5	90	339	6.90E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.565
SRR1783600	control	25.444
SRR1783602	moderate drought stress	38.409
SRR1811619	moderate drought stress	38.188

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.989
DRR006520	Root Summer glycyrrhizin high producing strain	29.145
DRR006521	Root Winter glycyrrhizin high producing strain	31.461
DRR006522	Root Winter glycyrrhizin high producing strain	30.609
DRR006523	Root Summer glycyrrhizin low producing strain	47.246
DRR006524	Root Summer glycyrrhizin low producing strain	46.896
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.453
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.836

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.844
SRR2868004	Drought Stress (root)	50.205
SRR2967015	Control (root)	50.750

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.963
SRR9715740	Leaf	38.197
SRR9715741	Leaf	41.204
SRR9715739	Root	9.106
SRR9715742	Root	24.514
SRR9715743	Root	22.077

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	106.280
SRR8749028	MeJA induced 9h	113.894
SRR8749029	MeJA induced 9h	129.182
SRR8749030	Uninduced	80.057
SRR8749031	Uninduced	78.251
SRR8749032	Uninduced	91.394

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	62.594
SRR8400027	Control - Root	60.574