Gene detail

Gene detail information of Glyur000225s00014729.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10020.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_004502857.1	0	PREDICTED: probable inactive receptor kinase At5g10020-like isoform X1 [Cicer arietinum]
COG	YP_004775215.1	6.00E-35	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q0WR59\|Y5020_ARATH	0	Probable inactive receptor kinase At5g10020 (Precursor)
trEMBL	tr\|V7AWD6\|V7AWD6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW09600.1}

Sequence

Transcript Sequence

>Glyur000225s00014729.1
GTCTCTGTCTCTCTCTAACCCCTCCTCCTTCCCTCCGCTCNATGATGATGTTAACCTTCTACTCCTTCTAGGGTTCCTCTCTCTTTCTCTGTCTCTCTCTGTTTCTCTCTCCATCAATGAATAAGTAAGGAGTGTGTTTGCAACCACATTGAGTCCGATGAAGCTGTTGTTGTTGCTGTTGTTCTTCTCCTCAGTGGCGCATTTGCTTCCGGTTTCCGGTTCCCAACCGGAGCTCCGATCTCTACTTGAATTCAAGAAAGGCATAAGTACAGATCCACTGGGCCGCGTCTTCGACTCATGGAACCCTTCCTCACTCGACGACACCACCGCATGCCCACGCAACTGGGAGGGAATCACCTGCGACGACCTCACCGGAAACGTCACCGGAATCGTCCTCGACAAACTAGGCCTCGCCGGTGAACTCAAGTTCCACACTCTCCTCGACCTCAAGATGCTCAGAAACCTAAGCCTAGCCGGTAACCGTTTCACCGGAAGGTTACCCCCTTCACTCGGAACCCTCACCTCGCTCCAGCATTTGGATCTCTCACACAACAACTTCTACGGTCCCATCCCTGCTCGGATCAACGGCCTGTGGGGTCTCAATTACCTGAATTTGTCACTGAACCGGTTCAAGGGTGGATTCCCCACTGGTCTCACCAACCTCCAGCAACTGAAAGTCCTCGATTTGCACTCCAACGGTCTCTGGGCTGACATTGGAGACCTAATCTCNACTATGCACAACGTGGAACACCTCGATTTGAGCAACAACCAGTTCTTCGGTGGGCTTTCACTCTCACTCCAGAACGTTTCCTCTCTCGCCAACACGGTTCGGTTCTTGAACCTTAGCCACAACAACTTGAACGGAGGGTTCTTCCAAAACGACACCGTTGGGTTGTTTCGGAACTTGCAAGTTCTGGATTTGAGTGATAACTTGATCAGGGGTGAGCTTCCTTCTTTTGGGTCCTTACCTGCACTAAGGGTTTTTCGGCTAGCACAGAATCTCTTCTTCGGCGCCGTGCCGGAGGNATTGTTGCACGATTCAATTCCCTTGGAAGAATTGGATCTTAGTGCCAATGGGTTTACCGGCTCAATTGCTGTAATTAACTCCACAACTTTAACTATTTTGAATCTTTCATCGAATGGCTTATCAGGCTCTTTGCCAACATCTATGAAAAGATGTACAGTCATAGACTTGAGCAGGAATATGTTATCTGGTGATATTTCTGTTATACAGAACTGGGAAGCCACATTGGAGGTTATTGATCTGAGTTCAAACAAGCTGTCAGGATCCTTGCCTCCTCTTTTAGGGACATATTCAAAATTGTCTACCATTGACTTAAGTGTGAATGAACTTAATGGATCCATTCCAGGTAGTTTAGTTACTTCATCATCACTGACAAGACTAAATCTGTCTGGAAATCAGTTTACAGGACCACTTTTGCTTCAAAGTTCAGGGGCAAGTGAATTACTACTTATGCCTCCTTATCAGCCAATGGAATATCTTGATGTATCTAATAACTCTTTAGAAGGTGTCTTGCCTTCAGATATAGGTAGGATGGGCGCGCTCAAACTGCTGAATCTGGCAAGGAATGGCTTTTCTGGACAGCTTCCAAATGAAATGAGCAAACTTATTTATTTGGAGTACCTTGATTTGTCTAACAACAAATTTACTGGAAATATTCCCGATAAGCTTCCATCTAGCTTGACTGTATTTAATGTGTCCAATAATGATCTATCTGGTCNTGTTCCTCAAAATCTGCGCCACTTCCCTCCTTCATCCTTTTACCCTGGAAATGAAAAGCTAATGTTACCAGATTATTCTCCTGAATCTTCTTCAGTGCCACATAATATTCCAGAAAAAGTTAAACATCATAGTTCAAAGGGTAATATCAGGATAGCAATTATTGTTGCCTCTGTGGGTGCTGCTGTGATGATTGCTGTTGTTTTATTGGCTTATCATCGAACACAAGTAAAAGAATTTCATGGAAGAAGTGAGTTTGCTGGTCAAAATACTGGAAGAGATGCCAAGTTAGGAGGACTTGCAAGGTCCTCCCTCTTCAAGTTCCATACAAATGTGCAACCCCCAACAACTTCGTTGAGCTTTTCAAATGATCACTTGTTGACTTCCAATTCGAGGTCACTCTCTGGACAGCAAGAGTTTATAACTGAAATTTCTGAGCATGGCTTACCTCAGGGAATGGTAGCAACTAGTTCAGCATCTGTAAATCCTAATTTGGTGGATAACCCACCCACATCTTCTGGAAGAAAGTCTTCTCCCGGTTCCCCATTGTCATCTTCACCACGTTTTATAGAGGCTTGTGAAAAGCCAGTGATGTTGGACGTTTACTCACCNGATCGACTGGCTGGGGAACTGTTTTTCCTGGATTCTTCACTAGCATTCACTGCAGAGGAATTATCTCGAGCTCCAGCTGAAGTCCTTGGCAGAAGTAGCCATGGCACTCTGTACAAAGCTACTCTGGACAGTGGTCATATGTTGACTGTAAAATGGCTAAGGGTGGGGTTGGTCAAACACAAAAAGGAGTTTGCTAGAGAAGTTAAAAGGATTGGTTCTATGAGGCATCCAAACATTGTCCCTTTACGAGCATCCTATTGGGGGCCTAGGGAACAGGAGAGGCTTCTTTTAGCTGACTATATACATGGGGACAGCTTGGCCCTCCATCTTTATGAGACCACACCCCGGAGGCACTCGCCATTATCATTCAGCCAGAGAACAAGAGTTGCTGTTGATGTTGCAAGATGTCTTCTATACCTCCACGATCGAGGGCTTCCCCATGGAAATCTGAAGCCGACAAATATTCTGTTAGCAGGACCTGATTTCAGTGCTCGCCTTACAGACTACGGTCTGCACCGGCTCATGATGCCGGCCGGGATTGCAGAGCAGATACTAAATCTAGGAGCACTCGGATACCGTGCTCCGGAACTTGCCACTGCATCCAAACCAGCTCCATCCTTCAAGGCTGATGTGTATGCACTTGGTGTGATCCTAATGGAGCTGTTGACCAGAAAAAGTGCAGGTGACATAATATCAGGGCAATCAGGTGCTGTTGATCTCACAGATTGGGTTAGGCTGTGTGAGAGAGAAGGNAGGGTAATGGACTGTATAGACAGAGACATTGCAGGTGGGGAAGAATCCTCCAAAGAGATGGACCAACTGCTTGCAACATCTCTCAGGTGTATTCTCCCTGTAAATGAGAGGCCTAACATCAGACAAGTTTTTGACGATCTCTGTTCTATATCATCGGTTTGAAAAAAATTTGTACATGCGTCTGGGAATTAGTTTTTTTATTTTTGGTTCCTCNACCCATTGTCATTTTCTGATTCTTTGTACCCTTCTTATC

Protein Sequence

>Glyur000225s00014729.1
MKLLLLLLFFSSVAHLLPVSGSQPELRSLLEFKKGISTDPLGRVFDSWNPSSLDDTTACPRNWEGITCDDLTGNVTGIVLDKLGLAGELKFHTLLDLKMLRNLSLAGNRFTGRLPPSLGTLTSLQHLDLSHNNFYGPIPARINGLWGLNYLNLSLNRFKGGFPTGLTNLQQLKVLDLHSNGLWADIGDLISTMHNVEHLDLSNNQFFGGLSLSLQNVSSLANTVRFLNLSHNNLNGGFFQNDTVGLFRNLQVLDLSDNLIRGELPSFGSLPALRVFRLAQNLFFGAVPEXLLHDSIPLEELDLSANGFTGSIAVINSTTLTILNLSSNGLSGSLPTSMKRCTVIDLSRNMLSGDISVIQNWEATLEVIDLSSNKLSGSLPPLLGTYSKLSTIDLSVNELNGSIPGSLVTSSSLTRLNLSGNQFTGPLLLQSSGASELLLMPPYQPMEYLDVSNNSLEGVLPSDIGRMGALKLLNLARNGFSGQLPNEMSKLIYLEYLDLSNNKFTGNIPDKLPSSLTVFNVSNNDLSGXVPQNLRHFPPSSFYPGNEKLMLPDYSPESSSVPHNIPEKVKHHSSKGNIRIAIIVASVGAAVMIAVVLLAYHRTQVKEFHGRSEFAGQNTGRDAKLGGLARSSLFKFHTNVQPPTTSLSFSNDHLLTSNSRSLSGQQEFITEISEHGLPQGMVATSSASVNPNLVDNPPTSSGRKSSPGSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLRASYWGPREQERLLLADYIHGDSLALHLYETTPRRHSPLSFSQRTRVAVDVARCLLYLHDRGLPHGNLKPTNILLAGPDFSARLTDYGLHRLMMPAGIAEQILNLGALGYRAPELATASKPAPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESSKEMDQLLATSLRCILPVNERPNIRQVFDDLCSISSV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00225	104116	109528	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.Other

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000225s00014729.1	PF08263.7	LRRNT_2	24	69	2.40E-09
Glyur000225s00014729.1	PF12799.2	LRR_4	100	134	1.00E-07
Glyur000225s00014729.1	PF13516.1	LRR_6	194	212	0.65
Glyur000225s00014729.1	PF00560.28	LRR_1	249	270	0.077
Glyur000225s00014729.1	PF00560.28	LRR_1	320	339	0.82
Glyur000225s00014729.1	PF00560.28	LRR_1	365	382	0.43
Glyur000225s00014729.1	PF13516.1	LRR_6	411	426	1.3
Glyur000225s00014729.1	PF00560.28	LRR_1	494	511	0.022
Glyur000225s00014729.1	PF00069.20	Pkinase	759	958	3.50E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.419
SRR1783600	control	17.579
SRR1783602	moderate drought stress	13.244
SRR1811619	moderate drought stress	13.295

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.951
DRR006520	Root Summer glycyrrhizin high producing strain	16.703
DRR006521	Root Winter glycyrrhizin high producing strain	4.424
DRR006522	Root Winter glycyrrhizin high producing strain	4.245
DRR006523	Root Summer glycyrrhizin low producing strain	16.218
DRR006524	Root Summer glycyrrhizin low producing strain	16.061
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.748
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.640

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.825
SRR2868004	Drought Stress (root)	20.564
SRR2967015	Control (root)	22.188

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.593
SRR9715740	Leaf	7.360
SRR9715741	Leaf	7.248
SRR9715739	Root	12.863
SRR9715742	Root	18.447
SRR9715743	Root	15.033

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.396
SRR8749028	MeJA induced 9h	10.390
SRR8749029	MeJA induced 9h	2.849
SRR8749030	Uninduced	3.353
SRR8749031	Uninduced	0.783
SRR8749032	Uninduced	0.826

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.749
SRR8400027	Control - Root	24.149