Gene detail

Gene detail information of Glyur000225s00014726

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24590.2	7.00E-22	TCV-interacting protein
NR	XP_006596412.1	5.94E-175	PREDICTED: NAC domain-containing protein 12-like [Glycine max]
Swissprot	tr\|Q9FFI5\|NAC86_ARATH	6.00E-12	NAC domain-containing protein 86 {ECO:0000312\|EMBL:AED92405.1}
trEMBL	tr\|I1MB70\|I1MB70_SOYBN	1.00E-178	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G36840.2}

Sequence

Transcript Sequence

>Glyur000225s00014726.1
GTTCCTTTATCAACAGTGTGAGAAGACTGAAAAAGCTAAAATCCATGGAATCNTTCTGATTTCTCAGTTCAGACCCTATTTCTTCTGTTTACAATTAATCCTCCTTTTTCTCTCTTTCACCTTTTTCCCTTTCGATTTTCTCTCTGCCGTAGAAACACAACACACACAATCTCTCTATCTCTCTCTCTGTGATGGGTGCCGTCGATTGTTTAGCGCCGCCGCGTGGGGAAGAGATGGCGGTGCTGTCTCTCAACAAGCTTCCGTTAGGCTTCCGTTTCCGTCCAACCGACGAGGAGCTGATCGATTACTACCTTCGCCTCAAGATCAACGGAAATGGGGACGACGTTTGGGTCATCCGTGAAATCGATGTCTGTAAATGGGAGCCTTGGGATTTGCCTGTGCACCCTTACGCCTTTCCATTACCTCTGAACCCATATGTCCTTTGTCGCTTATTTAAGAAGCAAGATGAGAGTCTTGAAGGTTCAAATGAAGTGGAGCAGACTGCTTCAACTCCTACGACTGCCAATTACTCNCCAGAAGAAATACAATCTGATCCAACTCTGGTTCCTGTATCTTCCTCACAAGCCACAGAAGATGATAAGCACCTAGCTGTCATCCCTGANAACTCTGAGGAAGCAATATCCAACATTATAACCCCAGTTGATTGCCTCAGTGATGGGTGTGATTCCCGCGATGCACAAAATCAAATTGTAGAACCTTCTTTCGAGGATGATCAGCCCTTGAACTGGGACATATTTTATAACCCAACAAATGGGCAATTGGATGACAAATTATTCTCCCCAGTCCACGCGCACTTTCCACCAGAATTTTATTATCAACCTAACAATGAATTAGAACTTCAGTATGGTTCTAANGAGGCAGATGTTTCAGACTTTATTAACTCGGCTGTTAATTGGGACGAGTTCTCCCGTGAGGAGAACAGCAGTCTAGAGCTGAACTCAACCTTGCTTAATGTTAAGGACAGTGGATCATGCAGTGACTCGGATGTGGAAATGGCCANTATGACGTCCGATCGGCAGGCATTACATGCTGCTTACCCAGAGGAGGCAANTCAGCAAAAGTGCAATGTAGGATTGTTACAGAACAATTCCCAGATGGCTTTCTCAGCTGATGTTAGCATGGGCCAAGTGTTCAATGTGGTCAATGATTATGAGCAATCAAGAAAGCCTGATACAATTGTTCTTCAAGGTGATACTGGAATCAGGACAAGGACTCGACAAGGACAAAATGAACAGCCAAACATGAACCCAATCATTCACGGTGATACTGGAATCAAGATTAGGACTCGACAGGGACAAAATGAACAGCCAAACGTGAACCCAATGATACAAGGTATTGCACCAAGGAGAATACGATTGGGGGGAGTTGTTACTCGTTCATTTGGTTCCAAGGAGATGGCAAAAGATGGGAGTTGTGCACCAGAAGACCATAGCTCTGAAACCATCATTGCTGGGGAGAGCNAAGCTTCAGAAAACGATGCTGCTGATGAGAGCAGCACCACTGACACTACTGATGTGGATGAACCAGAGAAGACATCTCCCGAGGCAGCTGACACGAGAAAGACTTGTCAGCAACATGTTGCAACTACAGAATCCGTCTTGGGGTGGAAAGACTTTCTAGTGGGCAGAAGGGTCCGTTACACATCAAAGATTTCCTCCAATCNCGCCATGTGGTCTTCTGTTCTTGCAGTTTCGGCCATTGTGCTGGTCTCACTAGTATTACTTGTTAATATATCGGGATATCTTAGATTTAAAACTGCTTATTAGGAGATCATTCCTTTGTGCAGAATTTGCCTCCATTGTTTTTTTTTTGGGCCAGTTAAGGAGGCATGTAGGGTTGACTTTCCTAAATTCGTCTATAAGAATATACAATTATTATATAATAATAATATATATGTGCATATGTAGTTGTTGCAGAATATGGTAACCTAGTCATCAGGTTAGTCTGTAGACTCTTGTTGCTGCAGTTAGCATTTTTGTTTTTGTTTGCCCTNTTGGTTAGGGGTCACATCATGTTGTTGCCCTGGGATTTTGACTGTCCACTTTACCACGGTGGTTTGTTCTGTTATTGTTTTGCTCCCATGTTGTTTCATTGCTAATACATGTGTCATGTGTGAGCTCCTTGCATCTACTTTTGGCTATATTNACAAGGGGAGGAAGATCCTATGCAGTTTTTATTTATCTACAGACCATCTCAATCCTTACAATTATTGTTGTTGCTGCTACAAGATAAAATGGTAAACAAATAGTTTAATGGAAACTTGATGTTAAATCACAAATGCACCAGCTGGAGATAATTATCAACTCCTTTGTATCCATCAACCTGGGTGTTTGTGTTATATGGCTTGTCAAACTAACTCGATTACATATCAGGACTTGTACAATTTGTTGACATCAATAGTTGTCTATTAATTTGGCAACCTCCATTACATTGGTTATGAATTTCTAGTTCAAGTTTATTGAATGAAATCATTGAGGATGGAACTAGTCAAACATGGGTTGGCAATTGATGATGTTTATGATAAAAGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00225	83152	87798	-

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000225s00014726.1	PF02365.10	NAM	23	70	2.90E-13
Glyur000225s00014726.3	PF02365.10	NAM	23	70	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.285
SRR1783600	control	26.272
SRR1783602	moderate drought stress	21.635
SRR1811619	moderate drought stress	21.860

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	77.647
DRR006520	Root Summer glycyrrhizin high producing strain	75.821
DRR006521	Root Winter glycyrrhizin high producing strain	21.073
DRR006522	Root Winter glycyrrhizin high producing strain	20.658
DRR006523	Root Summer glycyrrhizin low producing strain	113.097
DRR006524	Root Summer glycyrrhizin low producing strain	112.395
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.797
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.912

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.941
SRR2868004	Drought Stress (root)	31.768
SRR2967015	Control (root)	28.860

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.440
SRR9715740	Leaf	49.456
SRR9715741	Leaf	52.019
SRR9715739	Root	27.553
SRR9715742	Root	68.889
SRR9715743	Root	59.955

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.998
SRR8749028	MeJA induced 9h	51.272
SRR8749029	MeJA induced 9h	58.323
SRR8749030	Uninduced	54.089
SRR8749031	Uninduced	26.674
SRR8749032	Uninduced	27.586

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.363
SRR8400027	Control - Root	33.781