Gene detail

Gene detail information of Glyur000225s00014725

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	1.00E-93	NB-ARC domain-containing disease resistance protein
NR	XP_003615699.1	0	NBS-LRR resistance protein [Medicago truncatula]
COG	YP_001522729.1	1.00E-08	WD-containing repeat protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q7XA39\|RGA4_SOLBU	0	Putative disease resistance protein RGA4
trEMBL	tr\|G7JZI9\|G7JZI9_MEDTR	0	NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:AES98657.1}

Sequence

Transcript Sequence

>Glyur000225s00014725.1
GACATCCTTGATGAATGTTCCATTGAATCCCATCGACTTAGGAGCGGCTCATCCTCTTTCAATCCAAAGAACATCATGTTTCNCCATGAGATAGGCAACAGGTTGAAAGAGATTGCANGGAGATTCNATCAGATTGCTGAAAGTAAGAACAAGTTTCTTCTGCGAGAGGGTNTTAGGGAGAGGCCAACTGAAGTGGCTGAATGGCGCCAGACCAGCTCAACTNTTGCCGAACCANAAGTGTATGGACGAGAAGATGATAAGGAGAAGATCGTGGAGTTTCTTCTCAGCCAAGAGCGGGGCTCTGANTTCCTTTCCATCTATCCCATCGTTGGCTTAGGTGGTGTTGGAAAAACAACACTTGCTCAGATGGTCTACAANGACNACAGGGTGAGTAGCAAATNTNANACAAAAATCTGGGTTTGTGTTTCTGAGACTTTCTCTGTNAAGANGATTCTGTGCTCTGTTATAGAATCTATCACTAGGGAAAAGTATGATGTGTTTGGTTTAGATTCAATAGAANGAAAAGTGCAAGAACTTTTGCAAGGCAAAAGGTACTTGNTGGTTNTAGATGATGTATGGAACAGAAACCAAGAATTGGAATTCGGATTAAGCCAAGACAAATGGAACAAGCTGAAATCTGTGCTATCATGTGGATCNAGAGNTGCTTCTGTTTTGGTTTCCACTCGTGATAAGGATGTAGCAGCAATCATGGGAACATGCCAAGCTCACCATTTGTCTGGTCTCTCTGAAAATGAATGCTGGTTGTTGTTCAAACAATATGCATTTGGACGCGACACAGAAGAGCGGGCAGAGCTTGTAGCNATAGGCAAGGAGATAGTAAAGAAGTGCGGGGGATTGCCTCTTGCAGCACAAGCATTGGGAGGCTTACTGCGCTCAAGGAGTAAAGTAAAGGAATGGCTTGAGATCAAAGAGAGCGAACTTTGGACATTATCGGATGAGAATTCTATTTTGCNTGCCTTGAGGTTGAGCTACTTTTATTTACCTCCAACCTTAAAGCAGTGTTTCGCCTTTTGTGCTATATTTCCCAAAGATACAGAAATCAGNAAGGAAGATTTGATTCATCTTTGGATGGCTAATGGATTTATTTCATCCAGGGAAAACTTGGAGGTAGAAGATGTTGGCAATATGATCTGGAATGAATTGACCCAAAAATCATTCTTCCAAGATATCGAGATGGACNACGAAGGAGACATTTATTTCAAGATGCATGATCTTGTCCATGATCTTGCTCAATCAGTCATGGGGTCAGAGTGTATGATTTTGGAGAATGCAAACATGACGGGTTTGTCAAGAAGCACCCACCATATTGGTTTTGGCTCTGCTGAATTGTTATCAACCAATGAGAATGCCTTCAAAAAAGTTGAATCCCTGCGGACACTGTATCAGTTAAAATTTGACATCAAAACATTTTCTAACTTCCTCCCAACAAACCGTTCCCTTCGGGTTTTACGCGTATACTCTTGCAAGCTATCATCACTCGGGAGTTTAATTCATCTAAGGTATTTGGAGCTTTATCATCTAGACATAGAAACCTTACCTGACTCAATTTACAGCTTGCAGAAATTGGAAATCTTGAAATTGATAGATTGTAACAAACTTAGTTGTTTACCGAAGCACTTGACTGGCTTACAGAATCTCAGACATCTTATCATTAAAGGTTGTNNTTCATTGTCTCGTCTATTCNCTAACATTGGAAAATTATCTTGCCTAAGAACATTAAGTGTATACATTGTCAGATTAGAGACAGGGCATAGCTTGGCAGAGTTACATGATCTAAAGCTGGGAGGANAACTGGAGATCAAAGGCCTAAANAGTGTTGGNAGTTTATCTGAAGCTCGAGAGGCCAATTTGTTGGGTAAAAAGGACCTCCAACAATTAAGCTTGTCATGGAGAAATAGTACTGGAGAAACCAAGACACCTTCTACTAGTGCTGAGCAAGTACTTGAAGNGCTTCAACCCCACTCAAGTCTCGAGAGGTTGCATATACATTACTATGACGGATTATGCTTGCCAAGTTGGATCACAGTTCGTANTATTCTAGTTCATGTTCAACTTTGGAATTGCAAGAATTGCANACAGATTTCACCACTTGGTAAACTACCATCTCTAAAAANGCTCACATTATACATAATGGATAATGTGCAGTTCANNGATGATGATGAATCTCACGATGGTGTGCAAGTGAGGGCTTTCCCATCTTTGGAGGAACTCTTTTTATACCGGTTACCGAAGTTAGAGCGGTTGTTGAAAGTGGAAAGAGGGGAAATGTTTCCTCGTCTTTCTATGTTGGCCATCAACAATTGCCCTAAACTTTGGTTGTCATGCCTTCCATCTGTTAAACACCTCTCTGCACATGGATGTAACAATGAGTTACTGCGATCAATCTCTAGTTTCTGTGGTCTTACTGTCCTTAACCTTTATGGAGGTGGAGGACTAGACACGACATCTTTCCCAAAGGAGATGGTTAGCAACTTGATTTGTCTTCAAACACTACTAGTATTTGGTTTCCCAAAATTGAAGGAATTACCAAATGAACTCTTCAACCTNGNTGCTTTGGAGCATCTTAATATCCATAACTGTGGTGAGCTTGAGGCTTTACCGGAGAAAATTTGGGAAGGTCTTCAATTCCTTCGAACGATGAGAATTATTAATTGTGAAGGATTGAGATCCTTGCCAGAAGGTATCCGACACCTCACTTCACTTGAGGTTCTGACTATTGATTGTTGCCCAACATTAAAGGAGCGATGATATGGAACTACTGTGGTCTTGTCTCTTCACAGTGCAGGGTGTTTCTTCTGTCGAGTTACTACTGTCTTGCTTAATGCATTCAATACAATGCCTNAGGATCACAACTTTTTGGATGATCAGTAGCATTGCATCCCCTTTTGTTGCAACCAGCGCCACTTCTTTTGACAATACATATGCCAATTCACAAATATGATGAATAACCCCTCAGCAACAACTTGCTCAGCAGCAACAGTTCAGGCAATGTGCTATGCTAGGACTGGGAACAAGTAAAATTTTCAAGTTGTGGATTCAGCATTAAGATAATACACCCTTGAAATGGCTTAAAGGACAAGTTCCACATGTTTGATTATCATTTTTGTGCACAAGCAGCTCACTCTAGAGNATGTGTGAAAGGTTGCTTTCAATATTAACTTCTGTTCTGTTCAAACAGAGAAGTGTAGTTTTGAAAGTCTAATAGGCTAGTGGTTGGACCGGATTAACCAGGAATCAGCCCCTTGGCTAGTGTGGCCATGGCTTCAAAACTGGTGTGTCAGTGTACTGCATCATATGTGTGCTGTTAGCATAGCTAGCTTAGCTTAGCTCATGTTTTCAATTAGTTCAATCACTTGCAACATGTTACCGTCTGTCAGTTGTAATAATGGTCAACAACTGTTGTGACCAACCGTGTATAAATATTGTAGGTCACTGGAAGATCAAAAAATTAAGTGATTTTGACTTGTTTCTTTGTGTGCTTTTTTCTTTTTTTTATTTGACAATGTATTTGTAGTCCATGGCCCATGGCTGTTTCCAGATGGCAACCACCAAATGACATGTACTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00225	78187	82153	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000225s00014725.1	PF00931.17	NB-ARC	83	372	2.10E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.344
SRR1783600	control	13.248
SRR1783602	moderate drought stress	15.121
SRR1811619	moderate drought stress	14.983

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.380
DRR006520	Root Summer glycyrrhizin high producing strain	19.980
DRR006521	Root Winter glycyrrhizin high producing strain	7.026
DRR006522	Root Winter glycyrrhizin high producing strain	6.874
DRR006523	Root Summer glycyrrhizin low producing strain	19.211
DRR006524	Root Summer glycyrrhizin low producing strain	18.294
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.382
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.716

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.248
SRR2868004	Drought Stress (root)	21.007
SRR2967015	Control (root)	20.934

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.274
SRR9715740	Leaf	14.985
SRR9715741	Leaf	15.814
SRR9715739	Root	2.214
SRR9715742	Root	7.085
SRR9715743	Root	5.434

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.116
SRR8749028	MeJA induced 9h	4.994
SRR8749029	MeJA induced 9h	2.638
SRR8749030	Uninduced	1.932
SRR8749031	Uninduced	3.840
SRR8749032	Uninduced	3.056

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.342
SRR8400027	Control - Root	22.659