Gene detail

Gene detail information of Glyur000225s00014719

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24580.1	2.00E-64	Heavy metal transport/detoxification superfamily protein
NR	XP_007141362.1	2.15E-98	hypothetical protein PHAVU_008G189300g [Phaseolus vulgaris]
Swissprot	tr\|O82089\|CCH_ARATH	1.00E-06	Copper transport protein CCH
trEMBL	tr\|V7BA61\|V7BA61_PHAVU	8.00E-99	Uncharacterized protein {ECO:0000313\|EMBL:ESW13356.1}

Sequence

Transcript Sequence

>Glyur000225s00014719.1
GTCTTCTATAAAGCCTGCTAACCTTGCTCCACTACTTTACCCCTTCAAAACCTTCAACCCCCTTGAAGATTGAAAAGATTTCTGAAAAAGAATTATATTAAACTGAGAGGTTCTTTTTGCAGTTAGTGGCACTGCATGTGATCAGGAATCACTTAGTTTAAAACTTTATTATAAGCTAACAACTCCTACTCTCCTTCCTTATAATATCACTCACTTCTCTTTCCCCATCTCTTGTANGTCTAATAAGCACTTGTTTTCCAAAACCAGAACTGTTATTTGATATTTCATTCTCCATTCATAGAGAAAATGGGTGAGGAAGCAAAACAACAGGAACAACCAAAGGCTGAGGCCAAGCCAGAGGAGAAGAAAGAANAAAAGCCAGNAGAGGAAAAGAANGAAGAAAAGCCGGNAGAGGAAAAGCCAGCAGAAGAGAAGAAGAAGGAAGAACCTAAACCACCATCCCCATGTGTGCTTTTTGTGGACTTGCATTGTGTGGGATGTGCGAAGAAAATTGAAAGATCTATCATGAAAATGAGAGGAGTTGAGGGAGTGGTAATTGACATGGCTAAAAATGAAGNAACCATAAAGGGTATAGTGGAGCCTCAAGCTATCTGCAACATTATTACCAAGAAAACAAAGAGAAGAGCTAAAGTTATATCTCCATTGCCTCCAGCAGAAGGAGAACCTATACCAGAAGTTGTCAATTCTCAGGTTAGTGGACCAGTTACTGTGGAACTTAATGTGAACATGCATTGTGAGGCTTGTGCTGAGCAACTCAAGAGGAAGATACTCCAAATGAGAGGAGTTCAAACAGCAGTGACAGAGTTTAGCACAGGGAAAGTTATGGTTACAGGGACCATGGATGCAAACAAGCTAGTGGATTATGTCTATAGAAGAACCAAAAAGCAAGCCAAAATAGTTCCACAACCAGAACCAGAACCTGAAAAACCAGAAAAGAAAGAAGAGAGTAAAGAAGCTTCTGCTAGTGATGAGAAACCTGCAGCAGCAGCAGAAGAAGCTAATAAGCCTGAAGAGAAGAAAGAAGAGGAGAAACCACCAGAGGAACCTAAGAAAGAAGAGGGTACTAATGAAGGTGGTGAAAATAAGAATGAGAACAAAGAAGCAGAAAAGGGTGGTGGAGTTCAAACAGCAGTGACAGAGTTTAGCACAGGGAAAGTTATGGTTACAGGGACCATGGATGCAAACAAGCTAGTGGATTATGTCTATAGAAGAACCAAAAAGCAAGCCAAAATAGTTCCACAACCAGAACCAGAACCTGAAAAACCAGAAAAGACAGGAGAGAGTAAAGAAGCTTCTGCTAGTGATGAGAAACCTGCAGCAGCAGCAGAAGAAGCTAATAAGCCTGAAGAGAAGAAAGAAGAGGAGAAACCACCAGAGGAACCTAAGAAAGAAGAGGGTACTAATGAAGGTGGTGAAAATAAGAATGAGAACAAAGAAGCAGAAAAGGGTGGTGGTGAAGAAGGAAAAGCAGAAGTGAAAGAAGAAGCAAAGAAAGAAGAGAATAATAATGGGGTTGTGGTTAACATTGATGAGGAAGGGATGAAGAGGATGATGTACTATTACCAATACCCTCCACTCTATGTGATTGAACGCATGCCACCTCCTCAACTCTTCAGTGATGAAAATCCTAATGCTTGCTGCATTTCATAATAAACTCATCATATATATGAATAAGTACCACCAATGTGGGAGTTTTTTGGTTTGAGTTGGTGGAATGGAACAATTAATGTGTCTAAATGGAATCACATTATAATAATTAAGTTGATTAATAATAATAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00225	47093	55775	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000225s00014719.1	PF00403.21	HMA	56	108	6.70E-10
Glyur000225s00014719.1	PF00403.21	HMA	144	197	6.70E-10
Glyur000225s00014719.2	PF00403.21	HMA	56	108	4.40E-10
Glyur000225s00014719.2	PF00403.21	HMA	144	197	5.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.075
SRR1783600	control	3.346
SRR1783602	moderate drought stress	3.922
SRR1811619	moderate drought stress	4.027

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.344
DRR006520	Root Summer glycyrrhizin high producing strain	32.959
DRR006521	Root Winter glycyrrhizin high producing strain	1.416
DRR006522	Root Winter glycyrrhizin high producing strain	1.334
DRR006523	Root Summer glycyrrhizin low producing strain	5.291
DRR006524	Root Summer glycyrrhizin low producing strain	5.597
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.505
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.486

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.467
SRR2868004	Drought Stress (root)	0.759
SRR2967015	Control (root)	0.565

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.144
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.018
SRR9715739	Root	0.027
SRR9715742	Root	1.363
SRR9715743	Root	1.126

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.034
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.001
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.001
SRR8749032	Uninduced	0.001

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.165
SRR8400027	Control - Root	1.887