Gene detail

Gene detail information of Glyur000225s00014714

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G04270.1	0	RNAse E/G-like
NR	XP_003544280.1	0	PREDICTED: ribonuclease E/G-like protein, chloroplastic-like [Glycine max]
COG	YP_006527972.1	3.00E-75	ribonuclease E and G [Melioribacter roseus P3M-2]
Swissprot	tr\|F4IV66\|RNE_ARATH	0	Ribonuclease E/G-like protein, chloroplastic (Precursor)
trEMBL	tr\|I1MB77\|I1MB77_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G36910.1}

Sequence

Transcript Sequence

>Glyur000225s00014714.1
CGACCGCCACTGATTTCTCTAATATTCACAGAAGGCGCCAAGCTTACCCATTCATTATCCATACCATTACCAAAGCAATACCTCCATTTTCTCCACTATCTCTCTATTCCAATACCCTCTGCGCTGACACACCCATCCACCACCACTGCATCATTTCTCGGTTCCTTTCCTTCCCAGCGTCTCAAAGTGACGATGATGAACTCGTGCCTCGTCAGTGTCAGATTCCATTGCCACCTCTCATTCTCACTACTATAGCCACTTCCTCTCCAATTTGTTGGGTTCATGTTTCAATGGATGTCACTGCTGAAGTCGGTTTTTTTCACCACCCCCATCAGCTTTTTCGTTGGAATACTCCCTTCTCTAACCCTTACATACTGCCACCAAAGAGGCACATATGTCACCATGTACCACTTCATGGTGTATATGGATTCACATGCTGTATGAAGAACCATAAATCAGTCAGAAGATTAGCTGCATTGTCAACAGACAAAGGAAAACCAACCACTAGTGTTGATGAGCTATGCAATATCGTTTGGACTGTAGAAGCTGATTTAGAAGATGGTCACCTTCTGTACGTAACTGGTGATCCTGCTGTATTAGGCTGCTGGAAACCAGACATGGCTGTACTAATGTCTCCTGTAGAACACACTAATGTATGGAAAGCTGAATTTCAGATTGCTTTTGGCTTGAACTTCAAATATAATTATTTTATTAAGGGAAAATCAAGGTCCTCAAGTGACATTATTTGGAAGCCTGGACCAGCATTTTCTCTGTCAGTACCTCTTACAGTCCTTGAAGATGATAAAATTGTGGTGAGGGATTTATGGATTATGTCTGATTCCCATATGTCTTCAGCTCATGCATGGAGTCCCTGCACTGAGGAAACGTATCTTCTAAATGAACCCTCTATATATTTTCCAATCGAAGATGAAGGAAGGAATCCGAGTCNCCTTGAAAATGATGTCCCAAAGTTTGAGACCCTCATTTCGGAAGATCAATTCTTTTATGAGGACATGGTGATTATGAATGATAAGGATTCACATTCTCCTAATACTTTTTCTGAGAATTACCAGCCTGTTGAGGAACCCTGGCTACTCCGTTCACCTCCCATTGTCTCTGAGGATAAAACGGAATCCGATGAATCTGAAACTGATGACACTGTAAAAGAGCAGGTGAAGCTGGTAGGTACAGAAAAGTTGTTACCTGAAGAAAGTAGTAATATGATTTCAAAAGACCCTGTTTCCACCATTATACTTATTAACTCATCAATATGTACCATGCAAAGAATTGCAGTACTGGAGGATGAAAAATTGGTTGAATTATTATTGGAACCAGTTAAGACTAATGTGCAATGTGATAGTGTATATGTTGGGGTAATCACAAAGTTTGTTCCCCATATGGGCGGGGCTTTTGTTAACATTGGGAATTCTAGACCCGCTCTTATGGACATTAAGGAATACAAGGAGCCATTTATATTCCCTCCATTTTGCAGAAGGACAAAGAAACAAGAAATTGATCTCAAGGGCAAAAAGGATCACATGTCTCGTGCTGCTGACATCTCTGATGGAATATCAGACATGCATTCCGAGGATGGTTATATAAAATCTGGACACAATGACTATGATGAGCATGAAGGAGATGATGATTTTTATATTTCGGAAGTTCTTAAGGAAAATGTGAACGGTGGTGTGGTTGATGATGAAGTAGAAGCTGACTTTGAGGATGATGTAGAGGGAAGTGATGTCCATATAGAAGGAGAAATGAATAACAGTTCTCTTCCTTTTGGCACAAATGGGTCTGTCAACTCTCATATTTTGCAAACAAAAGATACAAAAAGAGCAACCTACATNGCTTCGGGAGAAGACAAATGGATCAAAGTTCGCAAGGGAACCAAAATAGTTGTCCAAGTTGTTAAAGAAGGCCTTGGTACTAAGGGTCCCACTCTGACTGCTTATCCTAAACTAAGAAGTAGATTCTGGGTTTTGACTGCACGTTGTGATAAAATTGGAGTCTCCAAAAAGATTTCTGGTGTTGAGCGCACTAGGTTGAAAGTTATAGCAAAGACATTACAGCCGGAGGGTTTTGGCCTCACTGTAAGAACTGTTGCTGCTGGTCATTCTTTTGAGGAACTGCAGAAAGACTTGGATGGTTTGCTTTCGACTTGGAAAAATATAATGGAACATGCAAAATCTGCAGCTCTTGCTGCCGATGAAGGGGTGGAAGGAGCTGTTCCTGTAATTTTGCACAGGGCAATGGGTCAAACTCTCTCAGTGGTCCAGGATTATTTCAATGAAAATGTTAAGAAGATGGTGGTTGACTCCCCAAGGACATTTCATGAGGTGACCAATTACCTTCAGGAAATTGCCCCTGATCTTTGTGATCGGGTTGAACTATATGATAAAAAAGTTCCCCTTTTCGATGAATATAACATTGAAGGAGAGATTGACAATATCCTCAGTAAAAGGGTTCCACTTGCTAATGGAGGTTCTCTAATCATTGAACAAACCGAGGCATTAGTTTCTATTGATGTAAATGGAGGACATGGGATGTTTGGCCGTGGAACTACCCAGGAGAAAGCTATTCTAGAAGTCAATCTTGCAGCTGCAAGACAGATTGCAAGGGAGTTGCGAGTACGGGATATTGGTGGCATCATTGTGGTAGATTTCATTGGTATGACAGACGAAGCAAATAAAAGATTGGTCTATGAAGAAGTCAAGAAAGCCATTGAGAGAGACAGATCAGCGGTGAACGTCTCTGAATTGTCAAGACAAGGACTCATGGAAATAACACGAAAGAGGGTTCGACCAAGTGTGACATTCATGATTAGTGAACCATGTGCTTGTTGCCATGCCACAGGCAGGGTTGAAGCTTTAGAGACTTCCTTCTCAAAAATTGAACAGCAAATTTGTCGGTTTCTTGCAACAATGGACCGTAAGGGAGACCCGGAAAACCCCAAGTCCTGGCCAAAATTTATTCTGAGGGTTAACCATCATATGTGTGAGTACTTGACTTCAGGGAAAAAGACAAGACTTGCNATATTGAGCAGTTCTCTCAAAGTCTGGATTCTCTTAAAGGTTGCTAGAGAGTTCACCAGAGGAACATTCGAGGTCAAACCATTTACAAATGACAAAGTGGAAAAAAACCAGAAACAAGCTGCCATTTCAATGTTAAGATCCTCAGAAGCCAGTACCAAAAAGCCTGGCAAAAATGTGACTCTTGTTCAAGTGAAAAAATCAAAGGCTAGGGGGAAATAAATACTTCTTTCTTTCTTGGCATAGGATTTTTGTTCCATTTTGCTCACATGAATTTTGTTTATGCCATACATGGCTTAGAGAGAAGAAAATAATATGGTTTCACTTTTGAGAGTCCCAAGTTAGAAACAAGCTGTTATAGGTAAAGCTTTTAGGCACATGAGCAGTTTTGTTGTAAAGAACGGCACTTTTTACCAAGTGATTGCAAGTAGCAACCACACCTTCATTTGAGTCCTTATCAAAAGTAACATACCAACAATGGCTGTGAAGGGATGAAGAAGAGAAACTGGTGTACTTCAGGGTAAGCATTCCCT

Protein Sequence

>Glyur000225s00014714.1
MDVTAEVGFFHHPHQLFRWNTPFSNPYILPPKRHICHHVPLHGVYGFTCCMKNHKSVRRLAALSTDKGKPTTSVDELCNIVWTVEADLEDGHLLYVTGDPAVLGCWKPDMAVLMSPVEHTNVWKAEFQIAFGLNFKYNYFIKGKSRSSSDIIWKPGPAFSLSVPLTVLEDDKIVVRDLWIMSDSHMSSAHAWSPCTEETYLLNEPSIYFPIEDEGRNPSXLENDVPKFETLISEDQFFYEDMVIMNDKDSHSPNTFSENYQPVEEPWLLRSPPIVSEDKTESDESETDDTVKEQVKLVGTEKLLPEESSNMISKDPVSTIILINSSICTMQRIAVLEDEKLVELLLEPVKTNVQCDSVYVGVITKFVPHMGGAFVNIGNSRPALMDIKEYKEPFIFPPFCRRTKKQEIDLKGKKDHMSRAADISDGISDMHSEDGYIKSGHNDYDEHEGDDDFYISEVLKENVNGGVVDDEVEADFEDDVEGSDVHIEGEMNNSSLPFGTNGSVNSHILQTKDTKRATYXASGEDKWIKVRKGTKIVVQVVKEGLGTKGPTLTAYPKLRSRFWVLTARCDKIGVSKKISGVERTRLKVIAKTLQPEGFGLTVRTVAAGHSFEELQKDLDGLLSTWKNIMEHAKSAALAADEGVEGAVPVILHRAMGQTLSVVQDYFNENVKKMVVDSPRTFHEVTNYLQEIAPDLCDRVELYDKKVPLFDEYNIEGEIDNILSKRVPLANGGSLIIEQTEALVSIDVNGGHGMFGRGTTQEKAILEVNLAAARQIARELRVRDIGGIIVVDFIGMTDEANKRLVYEEVKKAIERDRSAVNVSELSRQGLMEITRKRVRPSVTFMISEPCACCHATGRVEALETSFSKIEQQICRFLATMDRKGDPENPKSWPKFILRVNHHMCEYLTSGKKTRLAILSSSLKVWILLKVAREFTRGTFEVKPFTNDKVEKNQKQAAISMLRSSEASTKKPGKNVTLVQVKKSKARGK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00225	3847	15106	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

molecular_function

GO:0003723 RNA binding

GO:0004540 ribonuclease activity

GO:0030246 carbohydrate binding

GO:2001070 starch binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000225s00014714.1	PF00686.14	CBM_20	80	165	7.70E-10
Glyur000225s00014714.1	PF10150.4	RNase_E_G	558	838	5.70E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.021
SRR1783600	control	0.978
SRR1783602	moderate drought stress	0.528
SRR1811619	moderate drought stress	0.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.176
DRR006520	Root Summer glycyrrhizin high producing strain	1.184
DRR006521	Root Winter glycyrrhizin high producing strain	1.933
DRR006522	Root Winter glycyrrhizin high producing strain	1.932
DRR006523	Root Summer glycyrrhizin low producing strain	1.016
DRR006524	Root Summer glycyrrhizin low producing strain	1.021
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.488
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.451

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.825
SRR2868004	Drought Stress (root)	3.421
SRR2967015	Control (root)	3.084

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.850
SRR9715740	Leaf	17.729
SRR9715741	Leaf	11.966
SRR9715739	Root	0.056
SRR9715742	Root	0.985
SRR9715743	Root	1.021

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.182
SRR8749028	MeJA induced 9h	1.630
SRR8749029	MeJA induced 9h	1.317
SRR8749030	Uninduced	0.423
SRR8749031	Uninduced	0.236
SRR8749032	Uninduced	0.306

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.871
SRR8400027	Control - Root	2.747