Gene detail information of Glyur000224s00017386 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06870.1 | 2.00E-65 | polygalacturonase inhibiting protein 2 |
| NR | KEH41287.1 | 7.64E-120 | polygalacturonase inhibitor protein [Medicago truncatula] |
| COG | YP_001192956.1 | 3.00E-17 | two component regulator [Flavobacterium johnsoniae UW101] |
| Swissprot | tr|Q05091|PGIP_PYRCO | 2.00E-78 | Polygalacturonase inhibitor (Precursor) |
| trEMBL | tr|A0A072VHK2|A0A072VHK2_MEDTR | 3.00E-120 | Polygalacturonase inhibitor protein {ECO:0000313|EMBL:KEH41287.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00224 | 221832 | 230614 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000224s00017386.1 | PF08263.7 | LRRNT_2 | 26 | 65 | 5.00E-10 |
| Glyur000224s00017386.1 | PF12799.2 | LRR_4 | 417 | 454 | 7.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.620 |
| SRR1783600 | control | 0.638 |
| SRR1783602 | moderate drought stress | 0.563 |
| SRR1811619 | moderate drought stress | 0.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.333 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.099 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 207.217 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 196.983 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.186 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.167 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.307 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.018 |
| SRR2868004 | Drought Stress (root) | 0.641 |
| SRR2967015 | Control (root) | 0.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.172 |
| SRR9715740 | Leaf | 0.472 |
| SRR9715741 | Leaf | 5.550 |
| SRR9715739 | Root | 0.621 |
| SRR9715742 | Root | 8.780 |
| SRR9715743 | Root | 6.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 170.822 |
| SRR8749028 | MeJA induced 9h | 423.982 |
| SRR8749029 | MeJA induced 9h | 458.793 |
| SRR8749030 | Uninduced | 727.364 |
| SRR8749031 | Uninduced | 1611.218 |
| SRR8749032 | Uninduced | 1655.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.991 |
| SRR8400027 | Control - Root | 3.573 |