Gene detail

Gene detail information of Glyur000224s00017383

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04810.1	0	pentatricopeptide (PPR) repeat-containing protein
NR	XP_004514863.1	0	PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Cicer arietinum]
COG	NP_715849.1	2.00E-06	RNA-binding protein [Shewanella oneidensis MR-1]
Swissprot	tr\|Q0WMY5\|PP365_ARATH	0	Pentatricopeptide repeat-containing protein At5g04810, chloroplastic (Precursor)
trEMBL	tr\|A0A072VGX7\|A0A072VGX7_MEDTR	0	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:KEH41294.1}

Sequence

Transcript Sequence

>Glyur000224s00017383.1
ATCCTTACGGGGGATTACCGTCTCTTATTTTATTTTGTAGCAGCAGCAGCGTCGTTTACCAGTGGAGTGTGGAGAGAGTATCAGAGTAGCGATGCAAGTCGCAAAGCGTGTTCTGCTACGATAAACGACAACAATGGAAGCTTTCCGTTTCTCATTCTCCACCTCACACCCACACCTTTCCATTCCCCCCAAACGCAAACACCACCACTCCTCCGCCGCTAAACCCATTTCCTCCTCCCTTAAACCGCCACCGGACTCCAACAACAACAACAACAACAACCCCTTCCGCCGCCCCTCCAAACCCCTCAAAACCTCCGCTTCTCCCTCCAAACCTAACTCCAACCCTAAAACCGCACCAAACCTAATAAACCCCCTCAAAAACCCCTCCAGTTCCCTCACCAACAAGCTTTGGCTCACAAGCAAACTCTCTCCTCCTCCTCCTCCGCCACCTCCTCCGCCTCCGACTCTTCCTCCGCCTCCTGAAACTGAACGAGAGAATGAAATTGCCGATGAGGACGGCGAAGGCGAGAGCTCCGATGACCGGACTCAGTTCCGGCAACCGGGGAAAATCTTCGTGGGGAACTTACCCGGGTGGGTGAAGAAACACGAGGTCTCGGAGTTCTTCCGGCAATTCGGACCGATAAAGAGCGTGATTCTGATTAAAGGCCACAACGACACGGAGAGGAATGCGGGGTTCGGGTTCATCATTTATGACGGTGGCGAAGCGGAGGCGGAGAGGTCGGCGATGAAGGCCGTGGAGTTCGACGGCATTGAGTTCCACGGGAGAGTCCTGACGGTGAAGCTGGACGACGGGAAGAGGCTGAGGGAGAGGTCGAGGGAGAGGGCGAAGTGGTTGCGTGGTGGGAATGATGAGAGAGAGTACAGGTCCACGTGGCATGAGGAGAGGGACGGTTCCAGGAAGGAGTTCCAGAAGATTCTGGAGACTGAGCCGGAGAATTGGCAGGCGGTTGTTCGTGNCTTCGAGAGAATTAAGAAGCCTGCCAGAAAAGAATATGGCTTGATGATTAAATATTATGCACGACGAGGAGACATGCATCATGCACGTCAAACATTTGAAAGCATGCGAGCAAGAGGAATTGAGCCATCTTCACATGTGTACAGTAGTCTTATTCATGCTTATGCAGTTGGTAGAGACATGGAAGAAGCTTTACATTGTGTTAGAAAGATGAAGGAAGAGGGCATTGAAATGAGTATAGTGACATACAGTATACTTGTGGCTGGATTTGCTAAAGTAGGCAATGCTGATGCTGCAGATCACTGGTTTAAGGAGGCCAAAGAGAGGCTTCCATCTTTAAATGCAGTCATTTNCGGGAACATAATTTATGCACACTGTCAAACTTGCAATATGGGTCGAGCTGAAGCCTTGGTGAGAGAGATGGAAGAACAAGGGATAGATGCTCCCATCGACATATATCATACCATGATGGATGGTTATACAATGATTGGCAATGAAGATAAATGCTTAATCGTGTTTGAAAGACTTAAGGAATGTGGTTTCTCTCCCTCAGTTGTCAGCTATGGTTGTCTTATTAATCTTTACACCAAGATAGGAAAAGTTTCTAAAGCATTGGAGATTAGCAGAATGATGAATTCGGCTGGCATAAAACATAACATGAAGACATACTCTATGTTGTTCAATGGATTCTTGAAGTTGAAAGATTGGGCCAATGCATTCTCCATTTTTGAAGACATTACTAAAGATGGTTTGAAGCCTGATGTAGTACTCTACAATAACATTGTAAAAGCTTTTTGTGGGATGGGCAATATGGATCGTGCCATTTGTATTTTGAAGCAAATGCAGAGGGAGAGGCATAGACCCACAACACGCACATTTTTGCCCATTATACATGGTTTTGCTAGAGCTGGAGAGATTAGGAAAGCCTTGGAGATTTTTGATATGATGAGGAGGAATGGCTGCATTCCCACCGTACACACATATAATGCTCTTATTCTTGGCCTTATGGAAAAGGCTGTAGGGATATTGGATGAAATGAATCTGGCCGGGGTTAGCCCAAATGAATGCACATATACAACTCTTATGCAAGGTTATGCNTCACTGGGTGATACTGAAAAGGCCTTTCAGTACTTCATGAAATTGAAGAATGATGGCCTGGAGGTTGATGTATATACTTATGAGGCATTGTTGAAGGCATGTTGCAAGTCAGGCAGAATGCAGAGTGCCCTAGCAGTCACAAAAGAAATGAGTGCAAGAAAGATTCCGAGAAACACTTTTGTCTACAACATTCTAATTGATGGTTGGGCTCGGAGAGGTGATGTTTGGGAAGCTGCAGACCTGATGCAACAAATGAGAAAGGAAAACATTCAACCAGACATCCATACCTACACTTCTTTTATAAATGCTTGTTGTAAGGCTGGGGATATGCAGAATGCAACACAGATTATACAAGAAATGGAAGCATCTGGTATAAAACCAAACCTCAAAACCTACACCACTCTAATACATGGTTGGGCACGTGCTTCTTTACCAGAGAAGGCTTTGAGGTGTTTTGAAGAGATGAAAGTGGCTGGATGGAAACCAGACAAAGCAGTGTACCATTGTCTTATGACATCTTTGCTATCCAGAGCCACCCTTGCTCAATCATACGTTTATAGTGGCCTCTTGTCTATATGTAGAGAGATGATAGAATCTGAGATGACCGTTGACATGGGAACTGCGGTCCACTGGTCAAGATGTTTGCGCAAGATTGAANGGACAGGAGGAGAACTAACTGAAGCCCTACAGAAGACCTTTCCTCCTGATTGGACCTCCCATAATGTTTTTAATGTCAATTCTGATGCAGAAACTGCTGATGATCCTGAAATTGATGATGATATTGATGATGATGATGATGATGATGATGATATTGATGATGATGTATATTCCAATGGAAGTGATAATGATGAGTACACTGATGATAGAAGATTATGGTAATGATATGTCATACAGTTGATGGTTTTGAATTATGTTATTGTAAATGGAAGTGGCAGATGCCCAAGTTTTTTGGTAATAAAATTTTCTATCAATTTTTCTCTGGTAAAAAGTGTGCAGGGATGCGGATATTTAGGCTCTGTTTGGCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00224	188754	200156	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000224s00017383.1	PF00076.17	RRM_1	146	220	1.00E-11
Glyur000224s00017383.1	PF13041.1	PPR_2	294	337	2.60E-09
Glyur000224s00017383.1	PF01535.15	PPR	362	390	0.0056
Glyur000224s00017383.1	PF13812.1	PPR_3	402	428	0.13
Glyur000224s00017383.1	PF01535.15	PPR	433	462	0.0021
Glyur000224s00017383.1	PF13041.1	PPR_2	464	512	2.50E-10
Glyur000224s00017383.1	PF13041.1	PPR_2	534	574	1.20E-09
Glyur000224s00017383.1	PF13041.1	PPR_2	577	616	2.50E-10
Glyur000224s00017383.1	PF13041.1	PPR_2	637	683	1.70E-12
Glyur000224s00017383.1	PF13041.1	PPR_2	705	753	5.50E-16
Glyur000224s00017383.1	PF12854.2	PPR_1	771	803	2.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.711
SRR1783600	control	4.839
SRR1783602	moderate drought stress	6.348
SRR1811619	moderate drought stress	6.414

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.705
DRR006520	Root Summer glycyrrhizin high producing strain	5.710
DRR006521	Root Winter glycyrrhizin high producing strain	4.609
DRR006522	Root Winter glycyrrhizin high producing strain	4.459
DRR006523	Root Summer glycyrrhizin low producing strain	5.713
DRR006524	Root Summer glycyrrhizin low producing strain	5.840
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.765
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.508

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.993
SRR2868004	Drought Stress (root)	9.273
SRR2967015	Control (root)	11.292

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.938
SRR9715740	Leaf	25.050
SRR9715741	Leaf	20.181
SRR9715739	Root	1.554
SRR9715742	Root	6.418
SRR9715743	Root	5.428

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.318
SRR8749028	MeJA induced 9h	7.525
SRR8749029	MeJA induced 9h	3.833
SRR8749030	Uninduced	3.352
SRR8749031	Uninduced	0.805
SRR8749032	Uninduced	1.914

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.687
SRR8400027	Control - Root	8.295