Gene detail information of Glyur000224s00017381 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27790.2 | 3.00E-62 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | ACJ85604.1 | 2.14E-110 | unknown [Medicago truncatula] |
| trEMBL | tr|B7FLH0|B7FLH0_MEDTR | 8.00E-111 | Uncharacterized protein {ECO:0000313|EMBL:AFK34153.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00224 | 168640 | 170721 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000224s00017381.1 | PF13893.1 | RRM_5 | 37 | 97 | 2.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.482 |
| SRR1783600 | control | 15.280 |
| SRR1783602 | moderate drought stress | 20.188 |
| SRR1811619 | moderate drought stress | 19.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.779 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.642 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.958 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.422 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.195 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.443 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.249 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.754 |
| SRR2868004 | Drought Stress (root) | 14.807 |
| SRR2967015 | Control (root) | 15.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.813 |
| SRR9715740 | Leaf | 6.783 |
| SRR9715741 | Leaf | 7.975 |
| SRR9715739 | Root | 2.313 |
| SRR9715742 | Root | 7.444 |
| SRR9715743 | Root | 6.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.323 |
| SRR8749028 | MeJA induced 9h | 12.434 |
| SRR8749029 | MeJA induced 9h | 10.362 |
| SRR8749030 | Uninduced | 7.622 |
| SRR8749031 | Uninduced | 4.138 |
| SRR8749032 | Uninduced | 5.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.818 |
| SRR8400027 | Control - Root | 18.271 |