Gene detail

Gene detail information of Glyur000224s00017377

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26230.1	6.00E-123	uricase / urate oxidase / nodulin 35, putative
NR	NP_001266028.1	0	uricase-2 isozyme 1-like [Cicer arietinum]
COG	YP_005529901.1	1.00E-49	urate oxidase [Amycolatopsis mediterranei S699]
Swissprot	tr\|P34798\|URIC1_CANLI	0	Uricase-2 isozyme 1
trEMBL	tr\|Q9LD80\|Q9LD80_CICAR	0	Uricase {ECO:0000256\|PIRNR:PIRNR000241, ECO:0000256\|RuleBase:RU004455}

Sequence

Transcript Sequence

>Glyur000224s00017377.1
ATGGGTGAGAAGGTAGAAGTGGGGTTGGAGTTGGAACAGAGGCACGGGAAGGAGCGAGTGAGAGTGGCTCGCGTGTGGAAGACCAGAGATGGTCGACACTTTGTTGTGGAGTGGCGCGTCAGCATCAACCTCCTCTCTGATTGCCTCAACTCCTATCTCCGCGATGACAATTCCGACATCGTATATGCAAAAGCAAAGGAATGTTCGGAGATACTTTCTGTGGAGGACTTTGCTATTCTACTTGCTAGACATTTTACATCATTTTACAAGCAGGTTACTACTGCCATTGTAAAAATTGTGGAGAAACCATGGGAGCGTGTTAGTGTGGATGGTCAACCTCATGAACATGGTTTCAAACTTGGATCCGAGAAGCATACGGCAGAGGCAATAGTAAAAAAGTCTGGTGCACTACAGTTGACTTCTGGTATTGAAGGATTGTCACTGTTGAAGACAACAAAGTCTGGTTTTGAGGGTTTTATAAGAGACAAATATACAGCACTTCCCGATACACGTGAAAGGATGCTGGCAACAGAAGTAACTGCAGTATGGAGGTATTCGTATGAATCGCTATATAGCATCCCTCAGAAGCCGCTTTATTTTACAGACAAGTACCTGGATGTAAAAAGAGTTCTGGTTGACACCTTTTTTGGCTCTCCAAAGGAGGGAGTCTACAGCCCATCTGTTCAAAGCACTCTCTACCAGATGGCAAAGGCCACACTAAACAGATTTCCTGACGTAGCTTCTATCCAATTAAAGATGCCAAATATTCATTTCATACCAGTCAATCTCTCAAACAAGGATGGTCAGATTGTGAAGTTTGATGACGATGTGTATTTACCAACGGACGAGCCACATGGATCGATTGAAGCTACCTTGAGCCGCATTCGGTCAAAGATGTAGAAACTACTATAACATCTCAGCTCATCCCTTCTGGTCAATTGGAGGTGCAGCTTACACTATAGTGCTTGTCATGATTTAAGATCATGTAAATAGTAAACCTGGCCAGAGAGCTACTTACTGCTTTCAATTAACATGTCATNTAATGTTAATGCTGGTTTGTTTTCTTTGCATTTTGTTTCATGGAGAACTACTTATTACACATGGAAAACCTGCACGAGGGATATCATGCAGGTTGCACCAATGTAGATCAAAACTGTTGTTGGGTTATACTTAGCTTGAATGTCTAAAATTCCAATAAAGTTCAATAAATTCCTTATGTTCTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00224	135446	139044	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00365	uaZ	EC:1.7.3.3	Purine metabolism	map00230
			Caffeine metabolism	map00232

Gene Ontology

biological_process

GO:0006144 purine nucleobase metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0004846 urate oxidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000224s00017377.1	PF01014.13	Uricase	13	129	1.50E-23
Glyur000224s00017377.1	PF01014.13	Uricase	139	290	1.70E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.906
SRR1783600	control	44.948
SRR1783602	moderate drought stress	57.747
SRR1811619	moderate drought stress	57.866

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.338
DRR006520	Root Summer glycyrrhizin high producing strain	48.332
DRR006521	Root Winter glycyrrhizin high producing strain	516.678
DRR006522	Root Winter glycyrrhizin high producing strain	497.530
DRR006523	Root Summer glycyrrhizin low producing strain	103.451
DRR006524	Root Summer glycyrrhizin low producing strain	102.842
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.447
DRR006526	Leaf Summer glycyrrhizin high producing strain	56.270

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	111.290
SRR2868004	Drought Stress (root)	185.386
SRR2967015	Control (root)	170.723

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	99.197
SRR9715740	Leaf	70.983
SRR9715741	Leaf	144.261
SRR9715739	Root	61.042
SRR9715742	Root	71.009
SRR9715743	Root	68.873

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	172.593
SRR8749028	MeJA induced 9h	441.596
SRR8749029	MeJA induced 9h	372.457
SRR8749030	Uninduced	367.365
SRR8749031	Uninduced	651.795
SRR8749032	Uninduced	437.819

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	174.825
SRR8400027	Control - Root	124.792