Gene detail

Gene detail information of Glyur000224s00017361.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04870.1	0	calcium dependent protein kinase 1
NR	XP_004498060.1	0	PREDICTED: calcium-dependent protein kinase 1-like isoform X1 [Cicer arietinum]
COG	YP_642814.1	6.00E-26	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|Q06850\|CDPK1_ARATH	0	Calcium-dependent protein kinase 1
trEMBL	tr\|V7BJZ6\|V7BJZ6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17370.1}

Sequence

Transcript Sequence

>Glyur000224s00017361.2
GCTCTTTTGATGCATTTCTCTAAAATGATGTAGACTTAGATCCGAGTAATGAAAATTGAGCAATTGTTGGCACGAAATAATTCAGTGTGAGAAGCAATATGGGGAACACATGTGTTGGTCCTAGCATTTCAAAAAATGGTATTATTCAATCATTTTCTGCAGCGATTTGGCGGTCCCAATCGCCGGAAGGATCAGTGTCTAATAGAGAATCCGTAAATGAGGTAGCAACTAATGAGCCTGAATCCCCCTTGCCTGTCCAAAGTAAACCTCCTGAGCAGATAACTATGCCGAAACCAGAAACAAAACAAGAGGCAAAATCAGAAACGGATCCGGAGAAGAGGAAACACAATAAACCTTCTGTGAAGAGAGTTTCTAGTGCAGGACTTCGCGTTGATTCCGTGTTACAGAGAGAAACTGATAATTTCAAGGAGTTCTTTAGTCTGGGGAAAAAACTTGGACAGGGTCAGTTTGGGATAACATTCTTGTGTGTGGAGAAAGCAACGGGACACCAGTATGCATGTAAATCTATTGCGAAGAGGAAGCTGGTAACTGATGAGGATGTTGAGGATGTGAGGAGGGAAATTCAGATAATGCACCATTTGTCAGGGCATCCTAATGTTATATCCATCAAAGGTGCTTATGAGGATGCCGTGGCTGTTCATGTCGTGATGGAATTATGTGCCGGTGGCGAGCTTTTTGATAGGATTATTCAGCGCGGGCATTATACTGAAAGAAAGGCAGCTGAACTTATTAGGACTATAGTTGGGGTTGTGGAAACTTGTCATTCTCTAGGTGTGATGCACAGAGACCTTAAACCTGAGAATTTTCTCTTTGTCAATCAGCAAGAGGATTCACTTCTCAAAACTATTGACTTTGGATTATCTGTGTTCTTTAAGCCAGGTGATATATTTGTTGATGTGGTTGGCAGCCCATATTATGTTGCCCCAGAAGTTTTGCGAAAGCGTTATGGTCCTGAAGCAGATGTTTGGAGTGCTGGAGTTATCCTGTACATTCTTTTGAGTGGAGTACCTCCATTTTGGGCTGAAAACGAACAAGGAATATTTGAACAGGTTCTGCATGGTGATCTTGACTTCTCTTCAGATCCCTGGCCTGGAATTTCTGACAGTGCAAAAGATTTAGTAAGGAAAATGCTTGTTCGTGACCCTAGAAGGCGGATGACTGCACATCAAGTATTATGTCATCCTTGGGTTCAAGTTGATGGTGTAGCTCCTGACAAGCCACTTGATTCCGCCGTATTAAGTCGCTTGAAGCAATTTTCTGCAATGAACAAGCTCAAGAAAATGGCTCTTATAGTTATTGCAGAGAGCCTATCTGAAGAAGAAATAGCCGGCTTAAAAGAAATGTTCAAGATGATAGATACAGACAACAGTGGTCAAATCACTTTTGAAGAACTTAAAGTTGGTTTGAAAAGAGTGGGTGCTAATCTTAAGGAGTCTGAAATTTATGATATAATGCAAGCGGCTGATATAGATAACAGTGGGACAATCGATTATGGTGAGTTCATTGCCGCNACATTGCATCTTAACAAGATCGAAAGAGAAGATCATCTATTCGCAGCCTTTTCTTACTTTGATAAAGATGATAGTGGCTATATCACTCAAGAAGAACTTCAACAAGCTTGTGATGAGTTTGGCATAAAAGATGTTCGCTTGGAAGANATAATCAAGGAAATTGATGAAGATAATGATGGACGCATAGATTATAATGAGTTTGTGGCTATGATGCAGAAAGGAAATGTTCCTGTGATTGGTAAGAAAGGCCTAGAAAATAACTTCAGCATTCGTTTCAAGGAGGCATTAAAATTGTAGTATTCATTGTCAGCATTGAGATTTTTTCCCCCTTTCCTTATATCCAATCCCATTCCCTTTTTCCTTTTTTTTGGGTCAAACCTTTTTCCTTTGTTTGAAAGTTCAAGATTGTATGCATTGGCACAAGTCCATGGGAGCCAGTTGGGCCTTTCAGTTATTTTGTTCTGTGTCCACTTTGCATGGATTTTTGTAATTATGAGAATGAATTAAACAGAGATATCTGGTGGAATTGTACTGTTATTGAGGAAATTGAGTAGTAATCAACTAGCCNATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00224	38473	43745	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13412	CPK	EC:2.7.11.1	Plant-pathogen interaction	map04626
			Plant-pathogen interaction	map04626
			Toxoplasmosis	map05145
			Toxoplasmosis	map05145

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000224s00017361.2	PF00069.20	Pkinase	114	371	9.30E-68
Glyur000224s00017361.2	PF13499.1	EF-hand_7	419	478	1.60E-12
Glyur000224s00017361.2	PF13499.1	EF-hand_7	491	549	1.90E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	55.183
SRR1783600	control	55.874
SRR1783602	moderate drought stress	31.373
SRR1811619	moderate drought stress	31.421

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.111
DRR006520	Root Summer glycyrrhizin high producing strain	39.502
DRR006521	Root Winter glycyrrhizin high producing strain	19.775
DRR006522	Root Winter glycyrrhizin high producing strain	19.433
DRR006523	Root Summer glycyrrhizin low producing strain	35.234
DRR006524	Root Summer glycyrrhizin low producing strain	35.161
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.598
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.858

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	90.984
SRR2868004	Drought Stress (root)	78.575
SRR2967015	Control (root)	68.823

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.408
SRR9715740	Leaf	52.636
SRR9715741	Leaf	57.212
SRR9715739	Root	3.993
SRR9715742	Root	32.595
SRR9715743	Root	26.439

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	84.223
SRR8749028	MeJA induced 9h	68.326
SRR8749029	MeJA induced 9h	62.062
SRR8749030	Uninduced	40.990
SRR8749031	Uninduced	50.813
SRR8749032	Uninduced	31.831

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	70.314
SRR8400027	Control - Root	65.485