Gene detail

Gene detail information of Glyur000224s00017358.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35840.3	9.00E-156	Sucrose-6F-phosphate phosphohydrolase family protein
NR	AES60113.2	0	sucrose phosphate phosphatase [Medicago truncatula]
COG	YP_007058994.1	1.00E-57	sucrose-6F-phosphate phosphohydrolase [Rivularia sp. PCC 7116]
Swissprot	tr\|Q5IH13\|SPP2_TOBAC	0	Sucrose-phosphatase 2
trEMBL	tr\|G7IDI2\|G7IDI2_MEDTR	0	Sucrose phosphate phosphatase {ECO:0000313\|EMBL:AES60113.2}

Sequence

Transcript Sequence

>Glyur000224s00017358.1
AGAAAAGTAAAAAACTTATGGATAGACTCAATGGTCCTGCCAATCTGATGATAGTTTCAGATCTTGATTACACAATGGTAGACCATGATGATCCAGAAAACCTTGCTCTTCTCAGGTTTAATGCACTATGGGAAGCATATTATCGTCATAATTCTCTGCTAGTTTTCTCGACTGGGAGATCACCAACTATATATGGAGAGTTAAGAAAGCAGAAACCTTTGTTGACTCCTGATATAACAATAATGTCTGTGGGGACTGAGATTACATATGGTGAATCCATGGTACCAGATGATGGGTGGAAACAGTATCTGGATCATAAGTGGAACAGGGACATAGTTGTGGAGGAAACAGCCAAGTTTCCTGAACTAATTAGTCAATCGGAAACAGAGCAACGGCCTCACAAGGTTAGCTTCTATTTGGAGAAAGGGAAGGCATCAAAAGTCATGCAAGCTCTCTCGAAATGTTTGGAAAAATGTGGGTTAGATGTGAAAATAATTTATAGCAATGGTATTGCTTTGGATATATTACCTCAAGCTGCTGGCAAAGGACAAGCCCTTACTTTTCTGCTTGAAAAATTAAAAGCTGATGGACTAGGACCACTCAATACTCTTGTTTGTGGTGATTCTGGAAATGATGCTGAACTGTTCAGTGTACCTGAAGTTTGTGGTGTCATGGTCAGTAATGCGCAGGAAGAATTGGTTCAATGGTATGCAGAAAATGCAAGGGACAATCCACAAATAATTCATGCAACTGAGAGATGTGCAGCTGGTATTATGCAAGCCATTGGTAACTTCTCTCTAGGTCCAAATGTGTCTCCAAGAGATATTAGAGACTCAACGTTAAACGGGAAAATTCTAAGTCCTAGCCATGAAGTAGTGATGTTCTACCTATTTTATGAAAGATGGATGCGTGGAGAAATTGAGAATTCTGAGAAGTATATACAAAATTTGAAATCAGTCTTTCATTCTATGGGAAATTTTGTCCATCCCTCAGGGGTTGACCGACCTATGCAACAGATTATAGATACCTTATCAAAGCTGTTTGGCGAGAAGCAGGGCCTAGACTTTCGGGTTTGGGTTGATCGTGTATCTTTTGCAGAGGTTAGTTTAGGCTCTTGGATGGTCAAATTTGACAAGTGGGAGTTATCTGGGAATAAGTTAAGGGGTTGTTCAACAAAGGTTTTGATGAATTCAAAGGTTGATGCACCAAATGAGTTTACCTGGATGCACTCACATCAGACTTGGTTGGATGGCTCAGGAGGAAAGGAGGATGATATGCCTTGGTTTATCTAGATTACTACTTATAGTTTCCTAATAATCACTTTTGTTAAATGCATCCCTAAGGTGCCAAATTATTTAGCTGAGGCACTGAGGCATGGCATTGTGTCCTCACCCCTTACAAGTGACTAAGGTGCATGTTGCCTTGAGGCTTGCCCTTTGTGACAATAATAGTTTTCAGCAAGTTGATAAAGCAGCAAGATGGTTGATAAGCATTTGATTTATGACAGTTCTCAGCTTTTGAAGAAGAGAAAAAAGACTTGGTTTTTTATACACAGACCCCATAGGCCTTTGTGATTAACTGGAGGGAGCTGCTATTTGAATAGGGACTTGCAAAAAATTTACCAAGGATTCAATGGCAATCAAGAAAGTTGAAATGGCAAAGGACTCCAAACTGTAGATTACAGGAACTCATGCAACGTATCCCATGATCTTGTTATCTTTGTTATTTTAACAATTTCTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00224	13911	17578	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K07024	SPP	EC:3.1.3.24	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005986 sucrose biosynthetic process

GO:0008152 metabolic process

molecular_function

GO:0000287 magnesium ion binding

GO:0003824 catalytic activity

GO:0016791 phosphatase activity

GO:0050307 sucrose-phosphate phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000224s00017358.1	PF05116.8	S6PP	9	261	2.00E-100
Glyur000224s00017358.1	PF08472.5	S6PP_C	262	393	5.50E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.743
SRR1783600	control	5.173
SRR1783602	moderate drought stress	5.189
SRR1811619	moderate drought stress	5.191

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.827
DRR006520	Root Summer glycyrrhizin high producing strain	6.917
DRR006521	Root Winter glycyrrhizin high producing strain	4.825
DRR006522	Root Winter glycyrrhizin high producing strain	4.605
DRR006523	Root Summer glycyrrhizin low producing strain	8.369
DRR006524	Root Summer glycyrrhizin low producing strain	8.526
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.489
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.465

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.431
SRR2868004	Drought Stress (root)	11.334
SRR2967015	Control (root)	10.865

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.495
SRR9715740	Leaf	8.664
SRR9715741	Leaf	10.006
SRR9715739	Root	1.768
SRR9715742	Root	5.006
SRR9715743	Root	3.984

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.843
SRR8749028	MeJA induced 9h	5.368
SRR8749029	MeJA induced 9h	2.960
SRR8749030	Uninduced	4.406
SRR8749031	Uninduced	3.822
SRR8749032	Uninduced	2.319

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.779
SRR8400027	Control - Root	10.122