Gene detail

Gene detail information of Glyur000223s00013823.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42520.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_003524948.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 37 isoform X1 [Glycine max]
COG	NP_355291.1	6.00E-95	ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
Swissprot	tr\|Q84W89\|RH37_ARATH	0	DEAD-box ATP-dependent RNA helicase 37
trEMBL	tr\|V7CR29\|V7CR29_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW31391.1}

Sequence

Transcript Sequence

>Glyur000223s00013823.1
CAACATTTTTAATTAATCTATTTCAATTTTTTTCAAAGAGAGAGAAACATCAAACATCACGAAAGCAAAGATATTTTTGTTGTTTCCTACTTCGAAGGCGCCTTCTCCTCCTCCTTCACTTTCTCTTTCTGCAATCAGACCGAATTAGGGTTTCTCGATCTTCCTCATTCCCAACTTCCCTCACCGATTCAGGGTTTTACTCTTCCCAACACAACACAGGTTCGAGACGTTTGCTGATTGGAACTCATTGGGTTGCGGTGCTGGTTCTGAACAATTGTTTTTTTGCGCTTTGGATAGTATTTGTCTGTTCTGAGCNAAAGGGTTGTTTTTTTGTTCCTTTATTGGGGCTCTTTGTGAGGGTGCTATTGCTATTCTGCAAAAGGAGGAGTTTTCCTTTGGAATTTTGTGGAGAGCTGTGGAGAACAAGAATTTGTGATTGACTATGCGAACTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAAAATGTAGGTCCTGGTTCTTCTGCCAACAGTGCTGGAACTGGTAGCACATTAGCTCCTTCGCGACCGGTTTATGTTCCTCCCCATCTGAGGAACCGCCCGCCGTCAGCAGAACCCCCTGCTCCAACACATAGTGGCCCTACTTCTGGCTCTGGTTCCAGTGCTGCTATTGGTGTTGATAATGCTGGATCCCGTTGGGCTCCACCCAGAAATGACTATCGTTCTGGGTATGGCGGTGGTGGCCGGGGTGGATGGGGAAACAGAAGTGGTGGTTGGGATCGTGGCAGGGAGCGGGAAGTCAATCCCTTTGAAGACGAGGATAATGAAGAACAGGCACCTAGTGAGCAGGAGAATACAGGGATAAATTTTGATGCATATGAAGACATTCCTGTGGAGACCAGTGGTGATAACGTGCCCCCACCTGTAAATANGTTCGCCGAGATTGACTTAGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATACCATACCAATATCTCTTGCTGGACGGGATTTAATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCAATCATCAGTGGAATCATGAGGGGCCAACCTGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCACTTGCACTTGTTCTCTCGCCAACTAGGGAGCTTTCAATGCAAATACATGAAGAGGCTAAGAAGTTTTCGTACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCACCAATAAACCAGCAGCTGCGGGATCTTGAGAGAGGAGTGGACATTCTTGTTGCAACTCCTGGAAGATTGGTAGATTTATTGGAGAGGGCTAGAGTTTCACTGCAGATGATCCGATATCTGGCCTTAGACGAGGCTGACCGGATGCTGGATATGGGTTTTGAGCCGCAAATAAGGAAGATTGTGGAAAAAATGGACATGCCTCCACCAGGTGTCAGACAGACTATGCTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGATTGGCCTCTGATTTCCTTTCAAAGTATATTTTCCTGGCTGTCGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAACGAGTTGAGTATGTTCAAGAGTCTGATAAGCGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGNAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCACGGTGACAGGTCACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGTAACACCCCCATATTGGTTGCTACTGATGTGGCTGCACGAGGACTTGATATTCCTCATGTTGCTCATGTGGTCAACTTTGACCTGCCAAATGATATCGATGATTATGTGCACCGAATTGGAAGAACAGGACGAGCAGGAAAGAAAGGCCTTGCCACTGCATTCTTTAATGACAACAATGCGTCACTAGCTAGGGCTTTAGCAGATCTGATGCAAGAATCAAATCAAGAAGTTCCTGCTTGGCTCTCACGGTATGCTGCAAGATCTTATGGCGGAGGAAGGAACCGTCGATCAGGAAATGGGCGGTTTGGTAGCCGTGACTTCCGGAGAGAGGGTTCTTTTAGTAGAGGTGCTTCGGATTACTACAATGCAGGAAACAACAGTGGTGGATATGGGGCCTCTGGTGGTGGATACGCTGGAGGGTATGGTCCTGGGGTCACTAGTGCATGGGACTGACTTTCAACTTTTGATAGCATTACATGTTGTCTTAGGTATAGGTGCGGATACACACCTATAGGATAATTCTTCTCCCCCATAATCTTGTACTGTTTACAATGCTTATCATTAAGGGGGATCGGAGTGTGTATATGTGGTCTAGTTGCCACATCAATAAAGGTTGTGCAATGTTGGTAGGCATTGGTGGTTACTAACATATTAGGAGTTTCTTGTCGACAACTTTGTGTCCTATCCATTTTGGGTGGTAATTTTGGTGGGAGATTGGTTGTAGAGTATGCAATGGGAGATGTTGAGCTTTTCTTTGTAGCCGTTCATGTTTCTCTCCTGAGCATGTTCTATCTAGTTTCAGCCCAATACACGTTGGAATATTATTATATTCCCTATTTGATGGGCCAGGTTTTTGTAACATTATTATAAACTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00223	223528	229119	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11594	DDX3X, bel	EC:3.6.4.13	RIG-I-like receptor signaling pathway	map04622
			Viral carcinogenesis	map05203
			Hepatitis B	map05161

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000223s00013823.1	PF00270.24	DEAD	181	362	3.40E-46
Glyur000223s00013823.1	PF00271.26	Helicase_C	438	512	8.50E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.582
SRR1783600	control	22.813
SRR1783602	moderate drought stress	20.540
SRR1811619	moderate drought stress	20.549

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.044
DRR006520	Root Summer glycyrrhizin high producing strain	36.922
DRR006521	Root Winter glycyrrhizin high producing strain	33.364
DRR006522	Root Winter glycyrrhizin high producing strain	32.522
DRR006523	Root Summer glycyrrhizin low producing strain	39.922
DRR006524	Root Summer glycyrrhizin low producing strain	39.715
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.475
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.167

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.520
SRR2868004	Drought Stress (root)	44.849
SRR2967015	Control (root)	54.599

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.941
SRR9715740	Leaf	32.420
SRR9715741	Leaf	34.223
SRR9715739	Root	26.549
SRR9715742	Root	40.432
SRR9715743	Root	37.939

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.645
SRR8749028	MeJA induced 9h	34.159
SRR8749029	MeJA induced 9h	30.988
SRR8749030	Uninduced	20.329
SRR8749031	Uninduced	18.304
SRR8749032	Uninduced	21.536

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.635
SRR8400027	Control - Root	35.059