Gene detail information of Glyur000223s00013822 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55270.1 | 0 | Galactose oxidase/kelch repeat superfamily protein |
| NR | AFK40250.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_008734338.1 | 1.00E-08 | Kelch repeat-containing protein [Actinoplanes friuliensis DSM 7358] |
| Swissprot | tr|Q93W93|FBK22_ARATH | 0 | F-box/kelch-repeat protein At1g55270 |
| trEMBL | tr|I3SJ08|I3SJ08_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK40250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00223 | 217629 | 221422 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000223s00013822.1 | PF00646.28 | F-box | 78 | 116 | 3.20E-06 |
| Glyur000223s00013822.1 | PF01344.20 | Kelch_1 | 172 | 212 | 4.30E-05 |
| Glyur000223s00013822.1 | PF01344.20 | Kelch_1 | 216 | 261 | 2.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.923 |
| SRR1783600 | control | 4.851 |
| SRR1783602 | moderate drought stress | 4.057 |
| SRR1811619 | moderate drought stress | 4.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.906 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.829 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.802 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.661 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.375 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.399 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.543 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.849 |
| SRR2868004 | Drought Stress (root) | 15.317 |
| SRR2967015 | Control (root) | 15.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.757 |
| SRR9715740 | Leaf | 32.726 |
| SRR9715741 | Leaf | 27.790 |
| SRR9715739 | Root | 4.836 |
| SRR9715742 | Root | 9.506 |
| SRR9715743 | Root | 8.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.140 |
| SRR8749028 | MeJA induced 9h | 7.945 |
| SRR8749029 | MeJA induced 9h | 7.455 |
| SRR8749030 | Uninduced | 7.947 |
| SRR8749031 | Uninduced | 6.209 |
| SRR8749032 | Uninduced | 5.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.098 |
| SRR8400027 | Control - Root | 14.023 |