Gene detail information of Glyur000223s00013814 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55260.1 | 6.00E-25 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | XP_003629697.1 | 8.14E-50 | Non-specific lipid-transfer protein-like protein [Medicago truncatula] |
| Swissprot | tr|O64864|YLS3_ARATH | 9.00E-29 | Protein YLS3 (Precursor) |
| trEMBL | tr|G7LHX9|G7LHX9_MEDTR | 3.00E-50 | Uncharacterized protein {ECO:0000313|EMBL:AFK34908.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00223 | 194132 | 194491 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000223s00013814.1 | PF14368.1 | LTP_2 | 29 | 116 | 5.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 136.082 |
| SRR1783600 | control | 138.173 |
| SRR1783602 | moderate drought stress | 106.164 |
| SRR1811619 | moderate drought stress | 106.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.078 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.323 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 161.012 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 150.130 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 469.138 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 473.477 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 99.593 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 96.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.328 |
| SRR2868004 | Drought Stress (root) | 0.624 |
| SRR2967015 | Control (root) | 4.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.979 |
| SRR9715740 | Leaf | 23.772 |
| SRR9715741 | Leaf | 12.333 |
| SRR9715739 | Root | 38.128 |
| SRR9715742 | Root | 12.568 |
| SRR9715743 | Root | 14.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.469 |
| SRR8749028 | MeJA induced 9h | 12.978 |
| SRR8749029 | MeJA induced 9h | 25.736 |
| SRR8749030 | Uninduced | 4.670 |
| SRR8749031 | Uninduced | 1.789 |
| SRR8749032 | Uninduced | 5.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.131 |
| SRR8400027 | Control - Root | 45.074 |