Gene detail

Gene detail information of Glyur000223s00013811.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13600.1	4.00E-37	Carbohydrate-binding X8 domain superfamily protein
NR	XP_003531231.1	6.86E-76	PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 3-like [Glycine max]
Swissprot	tr\|Q9FZ86\|PDCB3_ARATH	4.00E-31	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (Precursor)
trEMBL	tr\|I1KS99\|I1KS99_SOYBN	3.00E-76	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G11810.1}

Sequence

Transcript Sequence

>Glyur000223s00013811.1
ATGGCACCACCAATTCCAAAGATGGTGTTGTTAACCTTTGCGATGGCCATGATGATCAGCATGAATGTGATGGGTGTAGGGGCGAAAACATGGTGTGTGGCGAGGAGTGATGCGAGCTATGAGGCACTGCAAAGAGGCCTGGACTATGCATGNGGTGCTGGGGCTGATTGCAGGCCCATTCACCCCGGTGGTATCTGCTTTTACCCAAACACCATCCAGAATCACGCTTCCTATGCCTTCGACAGCTACTATCAGCGCCACGGCGCAGCCCCCACCACCTGCTCTTTTGGTGGCGTAGCTACCATTGCCGTAACTAATCCCAGCTTTGGACGATGTGTATACCCATTTTCTACAAGTTCAATGGCACCACCAATTCCAAAGCTGGTTTCTCTTGTGTTGTTAACCATGGTCGTGGATGTGATGAGAGTAGGAGCAACATTAACATGGTGCGTGGCGAGGTTTGATGTGACGGACCAGGCACTGAAGGGACCATTGAAGCAAGCATGTGGATCTGGAGCTGATTGCGGGCGGGCCCATTCAGCCCGGACTGCTGCTAGAGGAGCAAATTCATCAACCACAACGCCTGCACTGAACAACCCCAATCAAGTAGAAACAACACCACACCACCACCTTGTTATTAATATAACAAACAAACATCATAACTCAGTTTCAATGGCGGCACCACCAATATTCACCACCATTGTTACAGCAGCCATCATCATATTCATGAATGTGATGATGATGATGAGTAGTGTTGTTGCACAGCCACTGGGAGGGCAGCAGCAACAAGGAGGAGGAGGGAGTTGGTGCGTGGCGAGGAGTGACGCCAGCAACGATGCATTGCAAACAGCGCTGGACTATGCATGTGGTGCTGGTGCTGATTGTTTTCCACTTCAGCCCGATGGACTCTGTTTTCTCCCTAACACCATTCAGGCTCACGCTTCCTATGCCTTCAACAGCTACTACCAGCTCAAGAAAAGAGCCCCTGGTTCCTGTGATTTTGCTGGCACCGCCACCATTGCCCAATCCGATCCCAGCTATGGATCTTGTGTGTACCCATCTGCTGCAAGTGCTGCTGGAGGACCAAATACACCAAGCACAGTGCCTCCAATGAACAACCCAAATGTGCCAACATCTACCACAACAACACCAATCTATGGCGGTGGCCTAACCCCAGGAACGAGCACACCATTCACTGACAGTTCTAGAGCACCTTCAGAGGAAATAGCCACATGGTTTTTAGTTCTCTTTTCTTCTCTTCTTCTCATTCTGTCCATTATCTCTTAGCCTGTGTATTATGATATTGGGAAGGCTTACAGTTTTGTTAGAAAGAAGTTAAAAGGGAGCCTTTTGTTGTTTATAACCTTGCTTGATGCATACCCACCATTTAAATCCTCCAANGTACAAGGTTATGAACAAGTTAAGCAGGGTGGGCATATGGTTTTGCAGGCAAGAGCATAGCTAGGGCTGTAGCAAGGCCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00223	174789	183549	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000223s00013811.1	PF07983.8	X8	30	101	1.80E-14
Glyur000223s00013811.1	PF07983.8	X8	269	339	3.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.584
SRR1783600	control	1.630
SRR1783602	moderate drought stress	2.511
SRR1811619	moderate drought stress	2.519

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.106
DRR006520	Root Summer glycyrrhizin high producing strain	1.120
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.521
DRR006524	Root Summer glycyrrhizin low producing strain	0.518
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.188
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.133

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.461
SRR2868004	Drought Stress (root)	2.163
SRR2967015	Control (root)	2.573

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.272
SRR9715740	Leaf	0.159
SRR9715741	Leaf	0.000
SRR9715739	Root	0.613
SRR9715742	Root	2.386
SRR9715743	Root	1.571

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.383
SRR8749028	MeJA induced 9h	0.135
SRR8749029	MeJA induced 9h	0.212
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.014

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.501
SRR8400027	Control - Root	8.502