Gene detail information of Glyur000223s00013800 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12210.1 | 4.00E-147 | RAB geranylgeranyl transferase beta subunit 1 |
| NR | KHN47947.1 | 0 | Geranylgeranyl transferase type-2 subunit beta [Glycine soja] |
| COG | YP_007205770.1 | 6.00E-07 | hypothetical protein Sinac_5964 [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|O80642|PGTB1_ARATH | 2.00E-38 | Geranylgeranyl transferase type-1 subunit beta |
| trEMBL | tr|I1KS88|I1KS88_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G11710.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00223 | 97613 | 104365 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000223s00013800.1 | PF13249.1 | Prenyltrans_2 | 60 | 168 | 1.60E-20 |
| Glyur000223s00013800.1 | PF00432.16 | Prenyltrans | 211 | 253 | 3.70E-12 |
| Glyur000223s00013800.1 | PF00432.16 | Prenyltrans | 259 | 301 | 4.10E-12 |
| Glyur000223s00013800.2 | PF13249.1 | Prenyltrans_2 | 60 | 168 | 1.40E-20 |
| Glyur000223s00013800.2 | PF00432.16 | Prenyltrans | 197 | 239 | 3.40E-12 |
| Glyur000223s00013800.2 | PF00432.16 | Prenyltrans | 245 | 287 | 3.90E-12 |
| Glyur000223s00013800.3 | PF13249.1 | Prenyltrans_2 | 5 | 105 | 7.90E-17 |
| Glyur000223s00013800.3 | PF00432.16 | Prenyltrans | 148 | 190 | 2.70E-12 |
| Glyur000223s00013800.3 | PF00432.16 | Prenyltrans | 196 | 238 | 3.00E-12 |
| Glyur000223s00013800.4 | PF13249.1 | Prenyltrans_2 | 5 | 106 | 2.40E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.070 |
| SRR1783600 | control | 18.581 |
| SRR1783602 | moderate drought stress | 17.561 |
| SRR1811619 | moderate drought stress | 17.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.274 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.165 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 70.227 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 68.184 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 34.952 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.697 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.880 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.150 |
| SRR2868004 | Drought Stress (root) | 35.312 |
| SRR2967015 | Control (root) | 37.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.317 |
| SRR9715740 | Leaf | 20.157 |
| SRR9715741 | Leaf | 21.101 |
| SRR9715739 | Root | 10.792 |
| SRR9715742 | Root | 15.517 |
| SRR9715743 | Root | 14.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 57.529 |
| SRR8749028 | MeJA induced 9h | 29.741 |
| SRR8749029 | MeJA induced 9h | 62.814 |
| SRR8749030 | Uninduced | 23.253 |
| SRR8749031 | Uninduced | 27.425 |
| SRR8749032 | Uninduced | 29.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.243 |
| SRR8400027 | Control - Root | 25.273 |