Gene detail

Gene detail information of Glyur000223s00013798.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32810.1	0	beta galactosidase 9
NR	XP_004504354.1	0	PREDICTED: beta-galactosidase 9-like [Cicer arietinum]
COG	YP_003380010.1	3.00E-50	beta-galactosidase [Kribbella flavida DSM 17836]
Swissprot	tr\|Q9SCV3\|BGAL9_ARATH	0	Beta-galactosidase 9 (Precursor)
trEMBL	tr\|G7LHU5\|G7LHU5_MEDTR	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000223s00013798.1
GTGGTTGAAAATGCGAATTGCAAGGAAGGAGAAGAAGAAGGGATAAATAAGAACAAGATCATCACTGTTTGCAAGTTGCAATTTTGCAATTCCAAAGTAGGATTAGGAAGGATGAGATTGAGGGTGTTGGTGTGGGNGTGTGTCACTCTACTAGCAGGAATTGAGTATAGTGTTATAAGAGTGACAGAAGCAGCAGAATGGTTCAAACCCTTCAATGTGAGCTACGATCACAGGGCTCTCGTCGTCGACGGCAACCGCCGCATCCTCATCTCCGCCGGCATTCACTATCCCCGCGCCACTCCTGAGATGTGGCCTGATCTGATTGCAAAGAGCAAGGAAGGCGGGGCAGATGTAATTGAAACTTATGTTTTTTGGAATGGGCATGAGCCAGCCAGAGGACAGTATAATTTTGAAGGGAGATACGATCTCGTGAAGTTTGCAAAGCTGGTTGCATCCAATGGACTCTATTTCTTTCTCCGCATAGGCCCTTATGCATGTGCTGAGTGGAACTTTGGGGGTTTCCCGGTGTGGTTACGTGATATCCCTGGTATTGAATTTCGAACAAATAATGCACCTTACAAGGAGGAGATGAAGCGGTTTGTCTCCAAGGTGGTGAATCTCATGAGAGAGGAAATGCTCTTTTCTTGGCAAGGTGGACCTATAATTTTGTTGCAGATTGAGAATGAATACGGGAACATTGAGGGCTCCTATGGCAAGGGAGGTAAAGAGTATGTTAAATGGGCAGCTAGCATGGCTCTAAGTCTTGGTGCTGGTGTTCCATGGGTCATGTGCAAGCAACCTGATGCTCCATATGATATTATTGATACATGCAATGCATACTACTGTGATGGATTTAAACCAAACTCTCGTAACAAACCAACTTTGTGGACGGAGAACTGGGATGGATGGTATACACAGTGGGGTGAAAGATTGCCTCATAGACCTGTTGAAGACCTTGCATTTGCAGTTGCACGTTTTTTCCAGCGTGGGGGAAGCCTTCAAAATTATTATATGTATTTTGGTGGAACAAATTTTGGCCGCACTGCAGGGGGACCCTTGCAAATCACAAGTTATGATTATGATGCTCCAATTGATGAGTATGGTCTGCTGAATGAGCCAAAATGGGGTCACTTGAAAGATTTACATGCTGTTTTAAAGCTTTGTGAGCCTGCTCTAGTGGCTGTCGATTCACCAACATATATAAAATTGGGTCCAAAGCANGAGGCACATGTGTACCAAGCAAATGTTCACCCCGAGGGATTGAACTTGTCTCTAACTGAAGTCCCTAGCATATGCTCAGCATTTCTTGCCAACATTGATGAACAGAAAGCAGCAACTGTGACCTTTCGTGGTCAAACATACCGCATACCACCATGGTCTGTGAGCATATTGCCAGATTGCAAGAATACAGCTTTCAATACTGCTAAGGTTGGAGCACAAACTTCAGTCAAACTGGTAGAGTCTGATTTGCCACTTGTATCCGATTCTTTTCCAGCCCAGCAATTGATGCCCCACAATAGCATTTCCCACATCTCAAAGTCTTGGATGACTACGAAAGAGCCAATCAATATATGGAGTAAGAGAAGTTTCACTGTAGAAGGTATATGGGAGCACTTAAATGTAACAAAGGATCAATCTGACTATCTTTGGTATTCAACCAGAATATATGTTTCAGATGGTGATATCTTGTTTTGGAAGGAAAATGGTTTTCTTCCAAAACTCACTATAGATGGTGTCCGTGATATACTGCGTNTATTTGTCAATGGCCAGCTTATAGGTAATGTTGTTGGTCATTGGGTCAAGGTGGTCCAGACTCTTCAATTTCTGCCAGGATACAATGATTTAATACTGTTATCTCAAACAGTGGGTTTGCAGGTTGGGCTTCAAGGAGAGTTTTTAAAATTTTACAGTGAAGAGAATGAAAATGCAGAATGGGCAGAATTGACTCCTGATGCCATTCCATCCACTTTTACATGGTACAAGACATATTTTGATGTCCCTGGTGGTATAGATCCAGTTGCTCTTGACTTGGAAAGCATGGGGAAAGGACAAGCTTGGGTGAATGGTCATCATATTGGAAGATACTGGACTCTGGTCTCCCCAAAAAGTGGATGTGAACAAGTCTGTGATTATCGCGGGGCATACAATTCCGACAAGTGCACAACTAATTGTGGAAAACCAACTCAAACCTTGTACCACGTGCCACGATCATGGTTGAGAGCATCCAACAATTTACTTGTTATCTTGGAGGAAACTGGAGGAAATCCCTTTGGGATTTCTGTCAAGTTACATTCAGCCGGAATAGTTTGTGCTCAAGTGTCAGAATCCTACTATCCACCTTTGCAGAAGTTGGTGAATGCAGATCCCATTGATCAAGAAGTTTCTGCGAATAATATGATACCTGAAATGCACTTGCGTTGTCAAGATGGACACACAATTTCCTCCATAACATTTGCTAGCTTTGGAACTCCAAGAGGTAGTTGTCAGAGATTTTCTAGAGGAAACTGTCATGCGCCTAGTTCGATGTCTATAGTTGCCAAGGCTTGCCTAGGGAAAAGGAGCTGCTCCATTGAAATCTCAAACACTGTATTCGGAGGTGACCCCTGCCAGGGTGTTGTTAAAACGTTGTCTGTGGAAGCAAGATGCACATCGGTGACATCACCATCGACTGATGGTATGAATCTAGTAAATAGCTTCTAAAATGATTGGTATGAACATTGTGTNCACAAACAAACCAACTGAACCTCTGAAATGGCCCTTATTTGTGTTCACTGTTTGATTGTATAAATATGATACTTTACTGGACTGTGTATAAATAATATACCATCCTGTTCGATCCGATTATTAGTCAAGATCAAGGTTACAAGATTAGCACCTCCTTTAATCCATAAGATCTTGTAAACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00223	75674	87129	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000223s00013798.1	PF01301.14	Glyco_hydro_35	80	383	6.40E-113
Glyur000223s00013798.1	PF02140.13	Gal_Lectin	805	882	6.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.555
SRR1783600	control	33.757
SRR1783602	moderate drought stress	48.205
SRR1811619	moderate drought stress	47.857

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.611
DRR006520	Root Summer glycyrrhizin high producing strain	27.817
DRR006521	Root Winter glycyrrhizin high producing strain	15.050
DRR006522	Root Winter glycyrrhizin high producing strain	14.153
DRR006523	Root Summer glycyrrhizin low producing strain	24.973
DRR006524	Root Summer glycyrrhizin low producing strain	24.708
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.015
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.714

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.099
SRR2868004	Drought Stress (root)	45.830
SRR2967015	Control (root)	42.473

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.149
SRR9715740	Leaf	41.276
SRR9715741	Leaf	59.409
SRR9715739	Root	8.229
SRR9715742	Root	34.803
SRR9715743	Root	26.374

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.346
SRR8749028	MeJA induced 9h	14.161
SRR8749029	MeJA induced 9h	9.151
SRR8749030	Uninduced	8.986
SRR8749031	Uninduced	4.902
SRR8749032	Uninduced	5.671

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.577
SRR8400027	Control - Root	42.961