Gene detail

Gene detail information of Glyur000223s00013797

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13930.1	1.00E-134	Chalcone and stilbene synthase family protein
NR	BAF49290.1	0	chalcone synthase [Clitoria ternatea]
COG	YP_680369.1	8.00E-29	naringenin-chalcone synthase [Cytophaga hutchinsonii ATCC 33406]
Swissprot	tr\|P51082\|CHSB_PEA	0	Chalcone synthase 1B
trEMBL	tr\|A4F1Q7\|A4F1Q7_CLITE	0	Chalcone synthase {ECO:0000313\|EMBL:BAF49290.1}

Sequence

Transcript Sequence

>Glyur000223s00013797.1
GCGCTTGAATTTTTCTTTGAGCTCTGTCTTGTGCTCACTGTTTGTAATACGGAAATAAAAATCAGGGTAGGCGCTTTGGTCCACGCAATTCGGAGGAGTTGCGGTGCCGATTGCCATCACCGTGGCGGGGCCTTCAGCACGCTGTGCCTTACGGATCTCATCAACACTCACCATCTTCTCTGATATAAACTAGCTTGTGCCAAAGAATCTTTATCGCCCAAAAGGTAGACTTAATACTGAATATGAAACAAAAAGCTTAAAGGATGTGATGGGAGGGGTGTTGCAAATTGGTCTGGAAAATTGCATCCCCTGCCACGGTGATGGCAATTGGCACCGCAACTCCTCCGAATTGCGTGGACCAGAGCGCCTACCCTGATTTTTATTTCCGTATTACAAACAGTGAGCACAAGACAGAGCTCAAAGAAAAATTCAAACGCATGTGCGAAAAGTCAATGATCAAGAAGCGATACATGTATTTAACAGAGGAAATTCTGAAGGAAAATCCCAGTGTTTGTGCTTACATGGCACCATCACTGGACGCAAGGCAAGACATGGTGGTTGTAGAGGTACCCAGGTTGGGAAAAGAGGCAGCAACAAAGGCCATCAAGGAATGGGGTCAGCCCAAGTCCAAGATTACCCACCTCATCTTTTGCACCACAAGTGGTGTGGACATGCCCGGTGCTGATTACCAGCTCACGAAACTCCTAGGACTTCGTCCATCGGTGAAGCGCTACATGATGTACCAACAAGGGTGCTTTGCTGGTGGCACGGTGCTCCGTTTGGCAAAGGACTTGGCTGAGAACAACAAAGGTGCTCGTGTGCTCGTGGTTTGTTCAGAGATCACTGCGGTCACATTCCGTGGCCCTAGTGACACCCATCTCGATAGCCTTGTGGGACAGGCCTTGTTTGGAGATGGTGCAGCTGCAGTGATTGTTGGTTCTGACCCATTGGCGGGGGTTGAGAAGCCCTTGTTTGAGCTTGTGTGGACTGCACAAACAATCCTCCCAGACAGTGAAGGGGCTATTGATGGACATCTTCGTGAAGTTGGACTCACATTCCATCTTCTTAAGGATGTTCCTGGACTCATCTCAAAGAATATTGAAAAGGCCTTGGTGGAAGCCTTCCAACNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTAGGTACAAATGGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00223	69833	71108	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00660	CHS	EC:2.3.1.74	Flavonoid biosynthesis	map00941
			Circadian rhythm - plant	map04712

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000223s00013797.1	PF00195.14	Chal_sti_synt_N	1	209	4.20E-123
Glyur000223s00013797.1	PF02797.10	Chal_sti_synt_C	219	270	4.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.137
SRR1783600	control	0.147
SRR1783602	moderate drought stress	0.347
SRR1811619	moderate drought stress	0.424

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.095
DRR006520	Root Summer glycyrrhizin high producing strain	2.887
DRR006521	Root Winter glycyrrhizin high producing strain	0.150
DRR006522	Root Winter glycyrrhizin high producing strain	0.154
DRR006523	Root Summer glycyrrhizin low producing strain	1.322
DRR006524	Root Summer glycyrrhizin low producing strain	1.439
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.183
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.506

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.036
SRR2868004	Drought Stress (root)	70.409
SRR2967015	Control (root)	32.863

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.791
SRR9715740	Leaf	3.465
SRR9715741	Leaf	67.948
SRR9715739	Root	9.075
SRR9715742	Root	22.225
SRR9715743	Root	19.617

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.870
SRR8749028	MeJA induced 9h	6.490
SRR8749029	MeJA induced 9h	4.340
SRR8749030	Uninduced	90.917
SRR8749031	Uninduced	66.740
SRR8749032	Uninduced	43.587

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.181
SRR8400027	Control - Root	8.361