Gene detail

Gene detail information of Glyur000223s00013793

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13800.1	4.00E-112	Protein of unknown function (DUF803)
NR	XP_004504357.1	0	PREDICTED: magnesium transporter NIPA2-like isoform X1 [Cicer arietinum]
Swissprot	tr\|B3LFA3\|NIPA2_ARATH	4.00E-159	Probable magnesium transporter NIPA2
trEMBL	tr\|A0A072U492\|A0A072U492_MEDTR	0	Magnesium transporter NIPA2-like protein {ECO:0000313\|EMBL:KEH20655.1}

Sequence

Transcript Sequence

>Glyur000223s00013793.1
ATGGGGATATCCAAAGACAACGTTACTGGGCTCATCCTTGCTGTCTCTTCCAGCGTTTTCATTGGCTCTAGCTTTATCATTAAAAAAATGGGGCTAAAAAAAGCTGGCACTACAGGGAAAAGCGCNGCCTCGGGAGGACATGCTTACTTGTATGAACCGTGGTGGTGGATTGGAATGGTCTCAATGATCGTTGGGGAAATCGCCAATTTTGCAGCTTATGCATTTGCACCTGCACTACTTGTAACTCCTTTAGGAGCTTTAAGTATAATTTTCAGTGCAGTACTAGCTCACTTTATCTTGAAAGAGAAATTGCACATGTTTGGTGTGCTTGGATGTGTTCTTTGTATGGTGGGATCTACAAGTATTGTTTTGCATGCTCCGCATGAAAGAATCATTCACTCTGTTAAGGAAGTGTGGCAGCTTGCGACAGAACCAGGTTTTGTTGTCTACACTTGTGCAGTTGTGATTCTTGTTTCTATCCTCATTTTCTACTGTGCTCCAAAATATGGGAAGAACCATCTGATCGTATATGTTGGAATATGTTCTCTCACAGGCTCACTCACGGTTATGGGTGTGAAAGCAGTGGGAATAGCTTTGAAGCTTACATTTGAAGGCATGAATCAATTCATTTACTTTCAAACCTGGTTCTTTACAGTGGTTGTGATAGGATGTTGTCTTTTGCAGATTAACTACTTGAACAAGGCCTTGGACACCTTTAACACAGCAGTCGTATCACCGGTTTACTATGTCATGTTTACAACACTAACCATCTTTGCCAGCATAATCATGTTTAAGGACTGGGACACACAAAATGCATCACAAATTGCCACTGAGTTGTGTGGCTTTGTCACAATTTTATCAGGGACCTTTCTCCTTCACAAAACCAAAGATATGGGAAATAGACCCACAGAACAAACTCCTGTTTTTTCAACACCAGACCGTGATCATAATAACTCAGGCACCTGAAAAGCCATGGACTTTTGAATCTAGGCAAGGACACAAGTGGTGGTCTTTTCACCCTTGTTCCCAAGCTAAGACACAGCTTGGAAAATCTGATAAAGGTTGTTATGCTCTCTGGTCTTTCAAAGAGAAGAAAGTCAGAGAAGGGGCGAGTGGTATTGTCTGGCTGGAACAAACAAGCTTGTAAAATGTTGAAAAAAGGCAAAGTGGAAANTATGATATTAATGTGAGATAGATTACAGGACAGCATTTGTGACAAATTCAGATAAAAAAAAAGCACCGCAATTTATTAGTTTCTTGTAGTCATTATCTTTTGATTTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00223	54814	58393	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015693 magnesium ion transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015095 magnesium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000223s00013793.1	PF05653.9	Mg_trans_NIPA	4	300	6.20E-140

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.140
SRR1783600	control	0.143
SRR1783602	moderate drought stress	0.104
SRR1811619	moderate drought stress	0.087

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.371
DRR006520	Root Summer glycyrrhizin high producing strain	1.455
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.151
DRR006524	Root Summer glycyrrhizin low producing strain	2.322
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.237
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.232

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.578
SRR2868004	Drought Stress (root)	0.645
SRR2967015	Control (root)	0.645

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.231
SRR9715740	Leaf	5.148
SRR9715741	Leaf	4.467
SRR9715739	Root	0.000
SRR9715742	Root	0.260
SRR9715743	Root	0.597

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.277
SRR8749028	MeJA induced 9h	0.100
SRR8749029	MeJA induced 9h	0.308
SRR8749030	Uninduced	0.495
SRR8749031	Uninduced	1.171
SRR8749032	Uninduced	0.609

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.847
SRR8400027	Control - Root	1.283