Gene detail

Gene detail information of Glyur000223s00013791

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23900.3	7.00E-88	RNA recognition motif (RRM)-containing protein
NR	KEH20654.1	0	RNA recognition motif (RRM) containing protein [Medicago truncatula]
Swissprot	tr\|Q39610\|DYHA_CHLRE	1.00E-06	Dynein alpha chain, flagellar outer arm
trEMBL	tr\|A0A072TT11\|A0A072TT11_MEDTR	0	RNA recognition motif (RRM) containing protein {ECO:0000313\|EMBL:KEH20654.1}

Sequence

Transcript Sequence

>Glyur000223s00013791.1
ATGTTCACGTATATATATCTCCTTGAACCCGGTTCGTCTATCAGGTTTCAGAAAGGAAAGCCCAAAGCTCCAACACCAAACTTGGCCGTCAGAGAAACAGGAGGGTTGATGGCTGATCGGAGTTTGGCCCTTGCGAAGCCGGTTTGGATGAAGCAAGCCGAGGAGGCGAAGCTGAAGAGCGAGGCAGAGAAAGCTGCAGCAGCCAAAGCAGCTTTTGAAGCAACGTTCAGGGATTTGGAGAAGAGTCGTGAGAAGAAGACCGTTAATTCGGACAGTGAATCAGACGAGTATGAGGACCTGTCACAGAAGCCCATTGGGCCTGTGGATCCTTCGAAGTGCATCGCAGCTGGCACCGGGATCGCCGGAGGAACGGCCTGTGCTCCGTCTTCGTTCACGGTGGTGACCAAGGATGCGGATGAGAGGAAGGTTTCAACTGGGGGTGCGCAGATCAAGGTGACAGTGACGCCCGGGTTGGGTGTTGGAGGGTCTGACCAAGAAGGGATTGTCAAGGATATGGGTGATGGAACTTATACTGTTACTTATGTGGTGCCAAAGAGAGGGAATTATATGGTCAGTGTTGAATGTAATGGCAGGCCAATCATGGGTAGTCCCTTCCCTGTGTTCTTCAGTGCAGGTAATAGTAGCGGAGGGCTGCTGGGTTTAGCTCCTTCATCTACGTATCCAAATATGGTTAATCAAACTATGCCCAACATGCCAAACTACTCTGGGTCTGTTTCTGGGGCATTCCCAGGATTGTTGGGAATGATTCCAGGGATTGTTGCTGGAGCTTCTGGGGGTGCTATTTTGCCAGGAATTGGGGCCTCACTGGGGGAAGTTTGTCGCGATTACCTTAGTGGGCGATGTGCAAAAGTTGATTGCAAGCTGAATCACCCACCTCATAATTTGCTAATGACCGCCTTAGCTGCGACAACTTCAATGGGAACACTTAGCCAAGCTCCTATGGCTCCTTCTGCTGCTGCAATGGCCGCTGCTCAGGCAATAGTTGCNGCCCAAGCCCTTCAAGCTCATGCAGCTCAGGTGCAAGCTCAGTCAGCGAAAGATTCCACTGAATACTCAAAACCTGAAGAGGCGACTGCCGCTCTGGCATTAAACAACATAGACGTTGGGGGGCGCCCTTTGAATGTTGAAATGGCAAAATCTCTTCCACAGAAACCATCTCCTGTGAATTCTTCACTTGCTTCATCCTCTCTTCCTTTAATGATGCAGCAAGCTGTTGCCATGCAACAGATGCAATTCCAGCAAGCGCTGATTATGCAACAAACTATGACTGCACAGCAGGCTGCTAACCGAGCTGCAACCATGAAATCNGCCACAGAGTTAGCAGCAGCACGAGCTGCAGAAATAAGTAAGAAATTGAAACCTGATGGACTTGAAAGCGAAGAGAAAGAGACAAAACAGAAATCCAGATCACCTTCTCCCCCTCATGGAAGATCACGAGGGGGGGCACGATCTCCTATCAATTACCGGAGGAGGAAATCCCGTTCCTACTCTCCTGCTCGCCATTATAAGGATCGTCGGTCCAGGTCACCATTGAGGTCCCATCACCAGTCTAGCTATGAAAGGGAACGGAGGTCCTATAGAGACAGCAGGGAACATAATGATAGGTACAGAAGACGAGATTCAGATAGATTGCTTGATCATCACTCATCTGGTTCAAGAAGAAACAGAAGTAGGAGTGTGAGCCCTCATGCAAAGAGATCATCCATTTCTCCAAAACGTCACAGAGAAAGTTCATCTCATAGAGGAAGGAAACAGTCACGTGCTGATTCTGGTTCTCCAAGTCATTGCAGAGGAAGTAGGTCTTCTCCAAAGATTGATGAAAAAAAACTAAGAAACAGAAGGCGCTCAAGGTCAAGATCNTCAGATGATAAGCTTAACTCCTTTGACAAAAATGAAGAAATTTTGCACGGAAAGTCTAAACATAGAGAGCGAAGACGATCCCGGTCAGCATCTGTGGGGGGGGGGCCTCACAGAAAGAGCCGATCATCCCCAAGAAAAGTGGATGAAAGGGGGGGGAGGCACAAGAGGTCCAGGTCAAAATCCGTGGATGATAAGCATCGCGGGGGGGAGAAATTGGATGACAACAGAAATAGAAGGTCAAGGCATAGTGATAGGGGGGGCTCCAGATCAAGATCTACGGAAAACAGGGATCAGAGTGATGGCAGAGAAGACCAAAGCAAATATGAAAAGTCAAAACATCATGATACAAAAAAGATCAGGTCAGAATCTGGCCAAGAGAAGCATCGTTCCAAAGATAAATCAGGTGAAAGCCAAGATAAGAAATCAAAGCATCGTGATAGAAGGCGTTCAAGGTCAATATCGGGGGGGGGTAAGCATGTCAAAGGAGGCACTTCATCCCATAGAGATGAGAGCAATTTTGAACACAGACGATTCAGGTCAAAGTCCCCTGAGGGCAAGCAATACTCCAGTGATAAATATGGAAACAGAGATGAAAGACCAGCGCATCAAGAGAAAACGGGGGGGAAATCAAAATTAGAAAATCATAAGCAATGTGCTGGGAGTGGGCCCTCCCCAAGAAATTTCAAGGAGTATGAATCAAAAGGAATAACAAAATCTGATTGGGGGGGTTTAGAAGTTAAGCATCATTTGAATAATGGAGAAAATGCATCCAGTGAAGAAAATTCAGAACTTCTTGAAAATGCCATGCAGGGATCAATTTTAAATATGAAGGACTCAACAAACCTGAATGATAATGGGATGTTGATTTCATTGAACGAGAACTACAAGTTAGATGGGTCAACTGAAAATGCAGGAGCTGGTGATAACCCAGGGTGGAAATGCATGGAAGAAGTGGGAAGTGGGACATGTTGGGTTGGAAAAAGGGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00223	40836	46973	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0005515 protein binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000223s00013791.1	PF00630.14	Filamin	107	205	1.40E-20
Glyur000223s00013791.2	PF00630.14	Filamin	107	205	1.50E-20
Glyur000223s00013791.2	PF00076.17	RRM_1	374	434	1.80E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.371
SRR1783600	control	17.174
SRR1783602	moderate drought stress	33.051
SRR1811619	moderate drought stress	32.840

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.851
DRR006520	Root Summer glycyrrhizin high producing strain	13.164
DRR006521	Root Winter glycyrrhizin high producing strain	16.896
DRR006522	Root Winter glycyrrhizin high producing strain	16.676
DRR006523	Root Summer glycyrrhizin low producing strain	16.308
DRR006524	Root Summer glycyrrhizin low producing strain	16.392
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.054
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.253

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.589
SRR2868004	Drought Stress (root)	42.504
SRR2967015	Control (root)	47.977

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.638
SRR9715740	Leaf	14.821
SRR9715741	Leaf	20.864
SRR9715739	Root	1.937
SRR9715742	Root	18.344
SRR9715743	Root	14.325

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.895
SRR8749028	MeJA induced 9h	33.823
SRR8749029	MeJA induced 9h	16.877
SRR8749030	Uninduced	13.060
SRR8749031	Uninduced	24.060
SRR8749032	Uninduced	13.874

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.816
SRR8400027	Control - Root	37.866