Gene detail

Gene detail information of Glyur000223s00013789

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23840.1	5.00E-71	HXXXD-type acyl-transferase family protein
NR	NP_001241338.1	0	uncharacterized protein LOC100819144 [Glycine max]
Swissprot	tr\|Q9LIS1\|CR26L_ARATH	4.00E-91	Protein ECERIFERUM 26-like
trEMBL	tr\|C6T849\|C6T849_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G28530.1}

Sequence

Transcript Sequence

>Glyur000223s00013789.1
GTTTCCATTAAATCTCCAACCATACCCATCGTGTGGTTGTTCCCAATATTCTCATCTCAGAGTACCACCACACCACACCACTCCCTCTCATTCTCTCTATAAATTATCCTTAGCAATCCCTCGCTATGGTATACAAGTACAACCACGCACCCAACCCAACCCCTTTGATCTTAGTAATTAATTTAACACTATGGTTTTCCCAAACGAAGAGATGACGATGAATATGAGTTTAGTCTCCGATGTGAGACTATCCTCAGTTGGGCCTGCACGGGCCACCGGGTCGGACGTGTTCCACAACCCGAGTGGGCTTGACTTGGCCATGAAACTCCACTACCTTAGGGTTGTTTACTTCTTCGACAGCGAGGTCGCACAGGGCGGCCTACTAACCACCATGAAGATAAAAGAGGCCATGTTCCACTGCTTCAACCACTACTTCATCCCCTGTGGCCGATTCCGCCGATCCGAATCTGGCCGTCCATTCATCAAGTGCAATGATTGTGGGTGCAGGTTCATCGAGGCCAACTGCAACAAAACCCTCGACGAGTGGATTGCCTCCAACGATTGGCCTTCTTACAAGTTGCTCGTTTCTCAACAAGTCATTGGCCCTGAGTTATCTTTCTCTCCTACTGTTCTCTTTCAGGTAACCCAATTTAAGTGTGGTGGAGTCTCATTGGGTCTTAGTTGGGCCCATGTACTTGGGGACCCCCTTTGTGCTTCTGATTTCATCAATGCTTGGGGCCATGCCATCACCAATAANTTGGAGCTAAAAATACCCATCAACATGCCAGCCCCCCCCCCAACACCCCGCCAACCCGGACCCGAGAAGGATCCCGGTTCGGTCCCCCCCGTCGACCCGGTGGGTGACCATTGGATCCCAGCCAACAACAACAAACCCCCCCCATTCTCCTTCCACATGACCAGCTCCCAGATGAACTACTTGCAAGCACAGGTATGGGGTCCAAGTGTTGAACAAACCCCTACTTTCGAATCCCTATGCGCGATGATTTGGCGCTGCGTGGCCCNGGCTCGCGGAGGATCCGGACCAACTCCCCCCCCCGTTTGTCGAACCGACCCAAACTGTAAGGGCAGCAATGATATCATTGGCAACAACCAAATGATATGCAAGGTTGAGGCTGGGAGTGAGTGTTCTATTGTTGACGCTGATTTGAGAGTTTTGGCTAGCATGCTTGCGGATCAAGGTGTGCCCCCCCGGGGTCAAATTGAGGAAGCAGTGGAAAAAGATCAAGGGGTGTCTGCCCCCCCTGTGTATGGTGCCAATTTGACATTTCTAGACTTGGAAGATGTTGGTGTGTATGACTTGCAATTGAAGGGACAAAGACCAAAATTTGTTTACTACACCCTTCAAGGGGTTGGAGATGAAGGAGCCGTTTTGGTGATGCCCTGGCCAAATAAAGGTTCTAACAAGAATAATGGTATTATTGATGGGAAGTTTGTGACCATAATATTGCCGGAAGATGAAATGGTGAAGCTTAAATCTGAGCTTAAGACGAATGGTATTCTCCTTGAGGGTGATTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00223	25463	31435	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000223s00013789.1	PF02458.10	Transferase	36	281	3.10E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.045
SRR1783600	control	0.024
SRR1783602	moderate drought stress	0.042
SRR1811619	moderate drought stress	0.062

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	60.640
DRR006526	Leaf Summer glycyrrhizin high producing strain	61.799

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.205
SRR2868004	Drought Stress (root)	0.126
SRR2967015	Control (root)	0.147

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.897
SRR9715740	Leaf	26.708
SRR9715741	Leaf	11.263
SRR9715739	Root	0.058
SRR9715742	Root	2.208
SRR9715743	Root	1.966

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.320
SRR8749028	MeJA induced 9h	0.620
SRR8749029	MeJA induced 9h	0.504
SRR8749030	Uninduced	0.588
SRR8749031	Uninduced	0.724
SRR8749032	Uninduced	0.936

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.084
SRR8400027	Control - Root	1.909