Gene detail

Gene detail information of Glyur000221s00012528.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66060.1	1.00E-118	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_004512179.1	0	PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like isoform X1 [Cicer arietinum]
COG	YP_004753320.1	1.00E-49	peptidyl prolyl 4-hydroxylase-like protein subunit alpha [Collimonas fungivorans Ter331]
Swissprot	tr\|F4JZ24\|P4H10_ARATH	4.00E-158	Probable prolyl 4-hydroxylase 10 (Precursor)
trEMBL	tr\|G7JYR0\|G7JYR0_MEDTR	0	Prolyl 4-hydroxylase alpha-like protein {ECO:0000313\|EMBL:AES95207.1}

Sequence

Transcript Sequence

>Glyur000221s00012528.1
AATTTTTTAACTTCAAAACCTGTAGTACTGTAGTGAATATGAAGTGTAGAAAGAAAACAATCAATGATCAATTCAATCCCTTCTTCCCCTTTCCTACACTCCACTTCCACCGTCTTGTTGTCGTAACAGTACTATAGAATCTTAATATATATATNCAATCCCAAGTGTTGTTGTTGTTGTTGTGAATTCGTTGAATTGAATTGAATCTGAGACAGATCTGATCTGGTGGATCTGAGGTCAACAATGGCGAAGCCAAGGTACTCTCGGCTTCCACCTCGGAAATCATCATCGTACTACACGCTGATCCTGTCGCTGTTCGTGGCGTTCACATTCCTGCTCCTNATTCTCCTCGCCCTCGGAATCCTCTCTATTCCCACCTCTTCTCGCGACCACTTCCCCAAACCCAANGATCTCACCTCCATTGCTCACAACACCAGAATCGACGATGAAGACGGTAAGGGAGAGCAGTGGGTTGAAGTTGTATCATGGGAACCTAGAGCTTTCGTCTATCATAATTTCCTGACCAAAGAGGAATGCGAATATCTAATCGATATAGCAAAGCCGCATATGCAGAAGTCATCTGTTGTNGATAGCGAGACTGGACAGAGTAAAGACAGCAGAGTGCGTACGAGCTCTGGAACTTTTCTGGCCAGGGGACGTGATAAGATCGTGAGGAATATTGAGAAAAAAATTGCTGACTTTACTTTTATGCCTGTAGAACATGGTGAAGGACTTCAAGTTCTACATTATGAACCTGGGCAAAAGTATGAGCCTCACTATGACTACTTTCTTGATGATTTTAACACTAAGAATGGGGGTCAGCGTATAGCAACAGTACTGATGTACCTTACAGATGTTGAAGAAGGGGGCGAGACAGTGTTTCCAGCTGCCAAGGGGAATTTTAGTTCTGTGCCATGGTGGAATGAGCTTTCTGATTGTGGAAAAAAAGGACTTTCAATTAAGCCGAAGAGAGGTGATGCATTACTTTTCTGGAGCATGAAGCCAGATGCTACTTTAGATCCGTCAAGCTTGCACGGTGGTTGTCCAGTGATTAAGGGTAATAAGTGGTCAAGTACCAAATGGATCCGCTTGGCTGAGTTCATCATGCCAATGATGTGCAATTTTAAAGACAGCTAATACTTCGTAGGNTAAAGCTTCAGGTCTTGAAGGAAATGTTTACAGTGTGACGCGGCGTTCTGTAATTTTTTATGTTCTGCTGTACCTCAGCTAACTCATTTTNCCCCGCCCTTGTCATTTATATTAGTAGCAAATATAATAAAAAAATGTACCGGTGAACTTNATATTAGTGAGGTTCAAGAAAATGTATGAAACCAATAGATGGAACAAGTATACCAGCTTTTTCCACCGACCTCATTTACCCGTGTAATAATCGTTGGTATATTTGTTTGCCCCTTTATGAGGGGCCTTCTCTCCACTTTTGCACGTTTTCAATCTATAAAGCAACATGCTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00221	207603	210724	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000221s00012528.1	PF03171.15	2OG-FeII_Oxy	162	282	7.70E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	151.416
SRR1783600	control	152.394
SRR1783602	moderate drought stress	102.122
SRR1811619	moderate drought stress	101.985

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	77.525
DRR006520	Root Summer glycyrrhizin high producing strain	77.861
DRR006521	Root Winter glycyrrhizin high producing strain	89.490
DRR006522	Root Winter glycyrrhizin high producing strain	86.645
DRR006523	Root Summer glycyrrhizin low producing strain	65.776
DRR006524	Root Summer glycyrrhizin low producing strain	65.703
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.035
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.365

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	101.229
SRR2868004	Drought Stress (root)	81.927
SRR2967015	Control (root)	76.283

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.623
SRR9715740	Leaf	32.680
SRR9715741	Leaf	34.035
SRR9715739	Root	49.551
SRR9715742	Root	54.448
SRR9715743	Root	53.455

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	119.316
SRR8749028	MeJA induced 9h	149.625
SRR8749029	MeJA induced 9h	104.966
SRR8749030	Uninduced	104.271
SRR8749031	Uninduced	96.142
SRR8749032	Uninduced	54.442

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	95.700
SRR8400027	Control - Root	103.207