Gene detail

Gene detail information of Glyur000221s00012516

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66055.1	3.00E-123	ankyrin repeat protein
NR	XP_004512186.1	0	PREDICTED: ankyrin repeat domain-containing protein, chloroplastic-like [Cicer arietinum]
COG	YP_001958455.1	2.00E-20	hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q05753\|AKRP_ARATH	1.00E-156	Ankyrin repeat domain-containing protein, chloroplastic (Precursor)
trEMBL	tr\|K7K461\|K7K461_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G36662.1}

Sequence

Transcript Sequence

>Glyur000221s00012516.1
GTCCAATTCTTGAGGTGTATTTACCAAAATCCCTAGTAGAAATTAAAAACAGAGAAGCTTGTGTCATTGAAAGGAGTTGGAGTTGGCATTTGCAGAAGGAACTTGGTACTAAAAAAAACACCACAATGTTCCATTTTTCCACAGTAGTTGTGCACAATCCTCAACCTCACAAACTCTTCCCTCCCCTCCCAATCTTCCCTTCTGCTACCATTCCCCGAAAGCTCCAATCTTTACGAACTCTGAAATTCCCCACAAAGTGGAACCTCCACTCTCTCCCCCAATCCTCACTGTACCCGCCACATCAGCATCATCACGATGACGACGACTCCGAAGAACACGTCATCGGTGACTGCGTCGTCTTCGAGGAAGGCATTTTCGAAGACCCCATTTTCCAAAACGGCTCCAATTCCGACAACATCGGAGTCAACGAACCCAAACCAAGTTCGAAGAAGAAGAAGATGAAGAAAAATGTGGGAATGGTAGCTACGGAGAATTTGGTTCCGGATAAGTGGAGGGAAGTTCAGGCAGAGATAAACATAACGAAGAAGGATAGGCGCAAGATAGCAAGGGAGATTGAGTTCAACAGCAAGGTTGAGAAGAAGAAGAGAGGGTTGGTTCCGTTGAGGGATATGAATCTGGATGATTATAATGCTTATAAGGAGGCCAAATTGGCACAACTCAGACCTCTTGTTCTCGATAACACTTGGATTGATGGGGATGAAGATGAAGATGAAGAAGAGGAAGTTTCAGAAGGAGAAGGGGGTGAATTGAGTGATGGGGGTGGTGGTGAGCGTGTAGAGCCCAAGAATCCTAGGTGGGCTGTTTATGGGAGGGGTTTGGAGGATGTCTCTGAGTTTTTCAATAGTGGGAATTACGACACTGCCACTGCCACTGCCACTGCCACTGCTAAGACCCCTGAAGGTCGTCCTAAGTTGTTTACTAAGGAGGAGAAGGTTTTGTTGACTAAGCGAGTGCCAGACTTGGCAACTGCTACTTCAGATAAATGGCTTCCTCTGCACACTCTTGCTGCATGCGGGGAAATTTACCTTTTAAATTCTTTGATGAAGCATAATGTTGATATTAATGCTGTGGATAAGGATGGTTTGACTGCTCTCCACAAAGCGATAATTGGCAAAAAGCAGGCCATAACTAGTTATCTCCTGAAAAGCTCGGCTAATCCCTTTGTACAGGATAAAGATGGGGCCACCTTGATGCACTATGCTGTACAAACAGCTTCTGTCGCGGCAATAAAAATACTCTTGTTGTATAATGTGGATATAAATCTTCAGGACAATGATGGCTGGACACCGTTACATCTCGCTGTTCAAACTCAGAGAACCGATATAGTGAAGCTTCTGCTGATTAAAGGGGCTGATAAGACATTAAAAAACAAGGATGGTTTAATTCCACTTGACCTTTGCCTTTACTCTGGTCAAAGTGTCAGAACATATGAGCTAATCAAGTTGTTGAAGCAACCTCAAAGACGTGTTAGAAATGTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00221	147999	151824	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000221s00012516.1	PF12796.2	Ank_2	288	356	1.30E-08
Glyur000221s00012516.1	PF12796.2	Ank_2	358	422	4.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.892
SRR1783600	control	10.546
SRR1783602	moderate drought stress	10.230
SRR1811619	moderate drought stress	10.390

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.362
DRR006520	Root Summer glycyrrhizin high producing strain	11.724
DRR006521	Root Winter glycyrrhizin high producing strain	9.589
DRR006522	Root Winter glycyrrhizin high producing strain	8.357
DRR006523	Root Summer glycyrrhizin low producing strain	9.682
DRR006524	Root Summer glycyrrhizin low producing strain	9.072
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.665
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.323

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.418
SRR2868004	Drought Stress (root)	10.898
SRR2967015	Control (root)	13.903

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.735
SRR9715740	Leaf	15.660
SRR9715741	Leaf	13.570
SRR9715739	Root	1.226
SRR9715742	Root	4.327
SRR9715743	Root	4.630

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.175
SRR8749028	MeJA induced 9h	14.360
SRR8749029	MeJA induced 9h	11.288
SRR8749030	Uninduced	7.055
SRR8749031	Uninduced	3.349
SRR8749032	Uninduced	3.693

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.816
SRR8400027	Control - Root	12.552