Gene detail

Gene detail information of Glyur000221s00012512

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35770.1	5.00E-47	Rhodanese/Cell cycle control phosphatase superfamily protein
NR	XP_004512233.1	8.53E-93	PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like isoform X3 [Cicer arietinum]
COG	YP_003269879.1	4.00E-19	rhodanese [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q38853\|STR15_ARATH	5.00E-58	Rhodanese-like domain-containing protein 15, chloroplastic (Precursor)
trEMBL	tr\|B7FGV4\|B7FGV4_MEDTR	4.00E-91	Uncharacterized protein {ECO:0000313\|EMBL:AFK35878.1}

Sequence

Transcript Sequence

>Glyur000221s00012512.1
CTCGTCGTCATTTATAAATGTAACAAAAATGTTACACACACACCCAACATACACCTAACATATACCCAATTTACTATTTCACACACTAATATTAAATATAGTATGGGTGTACAGTGGTCTATCTATCAAAGTCCTAAATGTAATGGGCCAAGAGCACCGTTTTTAAATCTTCGGCTTGGCAACGGCAACCTTGAGCATCATAGAATTCATCACAACAAAGCCAACCACTCATTTGCGTTCGGTAGTATCTAACTATCTACTCATATATATCCAATTCCAATAGTAAACGGCGACGCATGAAAGCAACGATAGCAACGTCGTTTGATGTCTCCTCCGCCGCTGGCTTCTGTTCATGCCCTCCGAAGCTACGGCAGAGAAGGAACCACACCACCAGTGTTGTTACTTGTTACGTGCAGCTCTCTGTTTCTGAAATCTTCAACTCTCACAAGGGACCAAGAAGCTTTTCTATTCGACCCAAGTTTCCAAACTTCCGCACGGAGTGTGCTCTGAAAGGGAATTTGGAGGCTGTGGGTGTTCCAACCTCGGTGCCAGTGCGTGTAGCACACGAGCTTCTTCTAGCTGGCCATAAGTATTTAGATGTGAGGACACCGGAAGAGTTTAGTNCTGGACATGCTCCTGGTGCTATTAACGTACCTTACATGTTCAGAGTTGGTTCAGGGATGGCAAAGAACATCAACTTTGTTAAAGAGGTCTCCTCACATTTTAGGAAAGATGATGAAATTATTGTTGGGTGTCAGCTTGGTAAAAGGTCTATGATGGCTGCTAGTGACTTGTTAGCTGCTGGGTTCACTGGACTCACAGATATAGCTGGTGGTTATGCTGCTTGGACCCAAAATNGACTTCCAACTGAGAAGTGAAGTGTTTCTNGTTGGACCTGCAGCTGTATATAGAATAAGTTTAGGGTGGAGTCCCATGTGTGGAACTGCATAAACACTTCACCAAGACAGCAGCAATTAAATACTGCAATGAGAATTCTAAAATCTTAGTACATGTAAATGCATAAAACGGAAGCTAGGGGTGGGTGGGTGGAATGGTAATATATATAAAAGTATATGTATATTTGTCGAGATATCAACAATTAAAGAAGGTTATCTATCAAACTTTGCAAAGAAGCTTTCTTTCTTGGCTTCTTGTGTTGATTGATGCCATCCCATCCTTACAGTTCAAACCAATGATATATTAATGAAAAATCGCTAAAGCAACAACTTAGTACAACTCTGTTTGATATCAGGTTTTTAAAAAAAATAAAAAGAAAGAAAGAAAAGTTTTGTGATTCTTAAGAGAGAGTTCTACATGTCACCACTCACATTCCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00221	112860	115812	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000221s00012512.1	PF00581.15	Rhodanese	99	186	8.60E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.405
SRR1783600	control	0.439
SRR1783602	moderate drought stress	2.339
SRR1811619	moderate drought stress	2.368

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.593
DRR006520	Root Summer glycyrrhizin high producing strain	2.682
DRR006521	Root Winter glycyrrhizin high producing strain	12.555
DRR006522	Root Winter glycyrrhizin high producing strain	11.967
DRR006523	Root Summer glycyrrhizin low producing strain	5.671
DRR006524	Root Summer glycyrrhizin low producing strain	5.549
DRR006525	Leaf Summer glycyrrhizin high producing strain	352.933
DRR006526	Leaf Summer glycyrrhizin high producing strain	349.821

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.569
SRR2868004	Drought Stress (root)	7.541
SRR2967015	Control (root)	15.105

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	320.434
SRR9715740	Leaf	388.367
SRR9715741	Leaf	302.492
SRR9715739	Root	1.268
SRR9715742	Root	0.827
SRR9715743	Root	0.594

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.191
SRR8749028	MeJA induced 9h	11.850
SRR8749029	MeJA induced 9h	3.404
SRR8749030	Uninduced	8.386
SRR8749031	Uninduced	9.464
SRR8749032	Uninduced	26.939

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.161
SRR8400027	Control - Root	2.045