Gene detail

Gene detail information of Glyur000221s00012507

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G65770.1	1.00E-29	ascorbic acid mannose pathway regulator 1
NR	AET04195.2	1.07E-89	F-box protein [Medicago truncatula]
Swissprot	tr\|Q1PEZ8\|FB117_ARATH	1.00E-39	F-box protein At2g26160
trEMBL	tr\|G7LIM0\|G7LIM0_MEDTR	4.00E-90	F-box protein {ECO:0000313\|EMBL:AET04195.2}

Sequence

Transcript Sequence

>Glyur000221s00012507.1
ATGGAAAATAGATCAGTGGAATGGTTACATCTTCCCAAAGAACTATGGCTAGCGATAACCAAACACTTCACAACAACGATGGACATTCTCCGATTCCGCAGTGTCTGCAATTCATGGCGCTCCCTTCTCCCTCTCCCTGACCCTTCCTCTCACGCACTCTTTTCTCCCCAACTTCGCATTCCTCTCGGCGAATTTTGCCTCCTCCAAACTAAACTATACCGTCTCCAACCATCATCACCTCAAGAAGACCCTTCAATTTCTTCCAAAGGGTGGATCATCAAAATTGGGGAATCAAAATCCATCCCACTTCGCCTCTTAGACCCTTTCACCAACCAACGTGCCTCACTCTCACACACTTCNCCAAAAGTTCTGAACTTGATGAACTTTCGGGTCGTGGAGTTGATGGAAGCATATTCCCTCTACGTGAAAAGTCACCTTTTTGAAGATGAAGTTGAAGGTGGACGACACGTGTTTATGCCTGTTCCCGTTCGTAAAGCGGTGTTGTTTGAGAATCGCATGGTCTTTGCTCTACAAAAAGATGGGAAGTTGGGTGTTTCCAAGATTGGAGATTGTTATGATGAGAATAATTGGCCTATTATGGAGGATGATGATGATGGGAACAACGACATGCACTATGATGACATGATACTTCACAAGGGGCAACTCTATGTTGTGGATAAATATGGAACCATCATGTGGGTCGATTGTTATTCTTCTTCGACCTTGAAGTTGGTTCAGTTCTCGCCCATGTTGTGTGGGTTTGGNAAAAAGAAGCGGTTGGTGGAGTGTGGTGGGAGTCTCTATGTGGTTGATATGTATGTTGAAGGGGAACCCGACAACAACATGGGGTCGTACTATGAGGTCGTTGATGTCAAGGTTTATAGGCTTGATGAGGAATGGGGGAGATGGTTGGATGTGAAAGACTTGGGTGATGTTCTGTTTGTTTTGGGTAAGGACTCTAATTTCTCTCTTTCAGCTAAGGATTACCATGGATGTGAAGGGAATTGCATCTACTTCTATTCTGGAGGCAGGATTTTGAAAGATTTGAAGACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00221	89349	90856	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000221s00012507.1	PF00646.28	F-box	8	43	0.0005
Glyur000221s00012507.1	PF03478.13	DUF295	303	340	8.20E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.843
SRR1783600	control	0.827
SRR1783602	moderate drought stress	0.934
SRR1811619	moderate drought stress	0.906

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.108
DRR006520	Root Summer glycyrrhizin high producing strain	4.800
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	14.898
DRR006524	Root Summer glycyrrhizin low producing strain	14.976
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.057
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.172

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.261
SRR2868004	Drought Stress (root)	0.278
SRR2967015	Control (root)	1.142

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.555
SRR9715740	Leaf	18.749
SRR9715741	Leaf	16.502
SRR9715739	Root	6.693
SRR9715742	Root	11.004
SRR9715743	Root	8.459

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.817
SRR8749028	MeJA induced 9h	0.666
SRR8749029	MeJA induced 9h	0.418
SRR8749030	Uninduced	0.487
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.107

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.065
SRR8400027	Control - Root	1.293