Gene detail

Gene detail information of Glyur000221s00012503

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47670.1	2.00E-143	Transmembrane amino acid transporter family protein
NR	CBI18883.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9SX98\|LHTL8_ARATH	0	Lysine histidine transporter-like 8
trEMBL	tr\|F6H0C2\|F6H0C2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45394.1}

Sequence

Transcript Sequence

>Glyur000221s00012503.1
AGGGCAACACAATTAACACACTTAAGGTGCAAAANAGACACAACAAGGTGTGAGAGGTGAATTAATCACAAATCATGGCTGAAGCTAANAATAAGGAAATATGGTCGGCACCAATAACACCAAGAACAACTTCAGTTATGGGAACACCTGTTGTGGCATCACCACCAGTGTCATGNCCACCCTCTCAACTTCACTCACCTTCTCTAACAAGGTCACCACTTCTTCACTCAGAGAATGAAGGAGACACACCTCGTCCTGCAAAGAGTAAGACTCCTAAGACTCCTAGAACTCCAAGAACCCCAAGACTCAATTTGACTCCAAGGTTCATTACCCCTTTGGGAAGCCCCATAAGGAAAGCTCTTAGGCTCACCAAGCTTGACCCTCAGGATGCTTGGCTCCCAATCACTGAGTCAAGGAATGGTAACAAATACTATGCTGCTTTTCACACTCTTTGCTCTGGGATTGGAATTCAGGCACTTGTCCTCCCTGTTGCCTTCACTGTTCTTGGTTGGACTTGGGGAATAATAAGTTTGACAATAGCGTTCATATGGCAAATTTACACCTTATGGCTGCTCGTTCATCTCCACGAATCGGTGGAGCAGGGTATTCGTTACAGTCGATACCTTCAGCTCTGCTTCACTACCTTTGGTGACAAATTGGGGAAATTGCTAGCCTTATTCCCAATATTGTACCTATCAGCTGGAACATGTACCACACTGATCATCATAGGAGGATCAACTGCTAGAACATTCTACCAAGTAGTATGTGGAGACTCATGCACTGCAAAACCCATGACCACTGTGGAATGGTACTTGGTGTTTACATGTGCAGCTGTGGTGNTATCACAGTTACCAAACTTGAATTCCATAGCTGGGATTTCCCTCATTGGAGCTGTCACTGCTGTAGGGTACTGCACCTCCATTTGGGTTGTTTCTGTATCAGAGGGTACCCTGCAAGGGGTGAGCTACAATCCTGCCACTATGCCTTCAAGCGAGAAGCATCCATCACATGTGCCCATGTGGAAAGGAGTAAAGGCTTCATACACACTCATTGCTGCATGCTTATTTCCCTTAGCCATTGGTGGTTATTGGGCTTATGGCCAGCTGATTCCTGCTGGAGGAATGCTCACAGCCTTATACCAATTCCATTCTCAAGACGTGTCAAGATTTGTTCTTGGGTTGACCAGCTTTTTCGTGGTAGTCAATGGTTTGTGTTCATTCCAAATATACGGCATGCCAACTTTTGATGACATGGAATCACAATACACAAAGAGGATGAAGAAGCCATGCCCCTGGTGGCTCCGGTTGATTTTCAGGGTCGTGTTCGGGTTTGTGTGCTTCTTCATAGCAGTGGCAATTCCATTCTTGTCTAGCCTTGCTGGTTTGATTGGAGGAGTTGCATTGCCAGTGACATTTGCATACCCATGTTTCATGTGGCTCAAGGCTAAGAAGCCAAAGAAGCATAGTTTCATGTGGTGTCTCAATTGGTTCTTGGGGACACTGGGGATGGGTCTTAGTGGCATATTGGTTGCAGCTAGTATATATGTTATCATTGATACTGGTGTTAATAAATTCAAAATTGTATGCCCCATNATGGGAACACCTGTTGTGGCATCACCACCAGTGTCATGTCCACCCTCTCAACTTCACTCACCTTCTCTAACAAGGTCACCACTTCTTCACTCAGAGAATGAAGGAGACACACCTCGTCCTGCAAAGAGTAAGACTCCTAAGACTCCTAGAACTCCAAGAACCCCAAGACTCAATTTGACTCCAAGGTTCATTACCCCTTTGGGAAGCCCCATAAGGAAAGCTCTTAGGCTCACCAAGCTTGACCCTCAGGATGCTTGGCTCCCAATCACTGAGTCAAGGAATGGTAACAAATACTATGCTGCTTTTCACACTCTTTGCTCTGGGATTGGAATTCAGGCACTTGTTCTCCCTGTTGCCTTCACTGTTCTTGGTTGGACATGGGGAATAATAAGTTTGAGTATAGCATTTATATGGCAGCTTTACACCTTATGGTTGCTCGTCCATCTTCACGAGTCAGAGGAGGAAGGTGTTCGCTATTGTCGATACCTTCAACTCTGCTCTGCTACATTCGGTGAGAAACTGGGAAAGTTGCTGGCCTTATTTCCAATATTGTACCTATCAGCTGGAACATGTACCACACTGATCATCATAGGAGGATCAACTGCTAGGACATTCTACCAGGTGGTATGTGGCCACTCATGCACTGCCAAACCTATGACCACAGTGGAATGGTACTTGGTGTTTACCTGTGCAGCTGTGGTGCTATCACAGTTACCCAACTTGAATTCCATAGCTGGGATTTCCCTCATTGGAGCTGTCACTGCTGTAGGGTATTGTACCTCCATTTGGGTGGTCTCTGTGGCACAGGGTACCCTGCCAGGTGTGGACTATAATCCTGTGAGGGCTGGGAGCAGTTTTCAAAATGCTCTTAGTGTGTTTAATGCCTTAGGTATCATTGCCTTTGCCTTTAGGGGTCACAACCTCATCCTTGAAATACAGGCCACTATGCCTTCAAACGAGAAGCATCCATCACACGTGCCCATGTGGAAAGGAGTCAAGGGTTCTTACACACTCATTGCTGCGTGCTTATTTCCCTTAGCCATTGGTGGCTATTGGGCCTATGGCCAGCTGATTCCTGCTGGAGGAATGCTCACAGCCCTATACCAATTCCATTCTCGTGATGTGTCAAGATTTNTTCTTGGGTTTACCAGCTTTTTGGTAGTAGTGAATTGTCTGTGCTCATTTCAAATATATGGCATGCCAACTTTCGATGACATGGAGTCACTATACACAAAAAGAATGAAGAAGCCATGCCCCCGGTGGCTCCGCTCAATTTCCCGGGTCGTCTTTGGGTTTGTGTGCTTTTTCGGAGGAGTGGCAGTTCCATTCTTNTCGAGCCTGGCTGGTTTGATTGGAGGAGTGGCATTGCCAGTGACATTAGCGTACCCATGTTTCATGTGGCTCAAGGCAAAGAAGCCAAACAAGTACAGTGTGATGTGGTGTCTCAATTGGTTCTTGGGGACATTNGGAATGGTTCTGAGTGGCATATTAGTTGCAGCGAGTACGTATGTTATCATTCAGACTGAGAGACTTGGAGAAAACTAA

Protein Sequence

>Glyur000221s00012503.1
MAEAXNKEIWSAPITPRTTSVMGTPVVASPPVSXPPSQLHSPSLTRSPLLHSENEGDTPRPAKSKTPKTPRTPRTPRLNLTPRFITPLGSPIRKALRLTKLDPQDAWLPITESRNGNKYYAAFHTLCSGIGIQALVLPVAFTVLGWTWGIISLTIAFIWQIYTLWLLVHLHESVEQGIRYSRYLQLCFTTFGDKLGKLLALFPILYLSAGTCTTLIIIGGSTARTFYQVVCGDSCTAKPMTTVEWYLVFTCAAVVXSQLPNLNSIAGISLIGAVTAVGYCTSIWVVSVSEGTLQGVSYNPATMPSSEKHPSHVPMWKGVKASYTLIAACLFPLAIGGYWAYGQLIPAGGMLTALYQFHSQDVSRFVLGLTSFFVVVNGLCSFQIYGMPTFDDMESQYTKRMKKPCPWWLRLIFRVVFGFVCFFIAVAIPFLSSLAGLIGGVALPVTFAYPCFMWLKAKKPKKHSFMWCLNWFLGTLGMGLSGILVAASIYVIIDTGVNKFKIVCPXMGTPVVASPPVSCPPSQLHSPSLTRSPLLHSENEGDTPRPAKSKTPKTPRTPRTPRLNLTPRFITPLGSPIRKALRLTKLDPQDAWLPITESRNGNKYYAAFHTLCSGIGIQALVLPVAFTVLGWTWGIISLSIAFIWQLYTLWLLVHLHESEEEGVRYCRYLQLCSATFGEKLGKLLALFPILYLSAGTCTTLIIIGGSTARTFYQVVCGHSCTAKPMTTVEWYLVFTCAAVVLSQLPNLNSIAGISLIGAVTAVGYCTSIWVVSVAQGTLPGVDYNPVRAGSSFQNALSVFNALGIIAFAFRGHNLILEIQATMPSNEKHPSHVPMWKGVKGSYTLIAACLFPLAIGGYWAYGQLIPAGGMLTALYQFHSRDVSRFXLGFTSFLVVVNCLCSFQIYGMPTFDDMESLYTKRMKKPCPRWLRSISRVVFGFVCFFGGVAVPFXSSLAGLIGGVALPVTLAYPCFMWLKAKKPNKYSVMWCLNWFLGTXGMVLSGILVAASTYVIIQTERLGEN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00221	62709	74126	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000221s00012503.1	PF01490.13	Aa_trans	119	303	4.30E-23
Glyur000221s00012503.1	PF01490.13	Aa_trans	308	493	8.80E-23
Glyur000221s00012503.1	PF01490.13	Aa_trans	604	1012	1.40E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.416
SRR1783600	control	3.507
SRR1783602	moderate drought stress	4.528
SRR1811619	moderate drought stress	4.621

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.326
DRR006520	Root Summer glycyrrhizin high producing strain	2.292
DRR006521	Root Winter glycyrrhizin high producing strain	1.689
DRR006522	Root Winter glycyrrhizin high producing strain	1.617
DRR006523	Root Summer glycyrrhizin low producing strain	2.068
DRR006524	Root Summer glycyrrhizin low producing strain	1.991
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.228
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.309

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.249
SRR2868004	Drought Stress (root)	92.594
SRR2967015	Control (root)	65.604

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.832
SRR9715740	Leaf	6.842
SRR9715741	Leaf	20.923
SRR9715739	Root	6.563
SRR9715742	Root	7.457
SRR9715743	Root	6.667

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.555
SRR8749028	MeJA induced 9h	18.956
SRR8749029	MeJA induced 9h	10.709
SRR8749030	Uninduced	81.998
SRR8749031	Uninduced	74.949
SRR8749032	Uninduced	59.274

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.472
SRR8400027	Control - Root	28.222