Gene detail

Gene detail information of Glyur000221s00012489

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G20560.1	1.00E-122	acyl activating enzyme 1
NR	XP_004512245.1	0	PREDICTED: probable acyl-activating enzyme 1, peroxisomal-like [Cicer arietinum]
COG	YP_004302266.1	1.00E-127	AMP-dependent synthetase/ligase [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|F4HUK6\|AAE1_ARATH	5.00E-147	Probable acyl-activating enzyme 1, peroxisomal
trEMBL	tr\|G7K007\|G7K007_MEDTR	0	Fatty acyl-CoA synthetase family protein {ECO:0000313\|EMBL:AES95274.1}

Sequence

Transcript Sequence

>Glyur000221s00012489.1
GTTGCAACTTTGGCTCCAAACATCCCAGAGCACTACGAGCTTCACTTTGGAGTACCAATGTCAGGTGCTGTTCTTTCTGCTCTCAACACCAAATTGGATGCAACAACATTGGCACTGATATTGGAACAATTAGAGTCTTGCAAAATCATATTTGTGGACTACCAATTCATTGATTCTGCCCTCAAAGCATCTGAAATAATCTCCCAAAGAAAATGCATTAAGCCACCCCTCATTGTCCTAATCATGCCACATAATTATTGTGACCAAAACCCATCTTTCACCCCCCCACAAGGTACCTTATTATTAAACTACAATGAACTACTTGCAAAGGGACAATCAGATTTCAGGACCACAATGCCTAGCAATGAATGTGACCCTTTATCAGTGAATTACACATCAGGCTCCACAGGAACTCCTAAAGCAGCTGTTTATAGCCATAGAGGAACCTATCTCAATTCACTAGCAGCAATTTCTCGTTTTCAAATGAAACCTATGGCAGTGTTTTTATGGACAGTTGACATGTTCCGTTGCAATGGTTGGTGCATTACTTGGGCAATGCCTGCTCTTGGTGGCACCAATGTCTGCCTCAGAAATGTCTCTTCAGCAAAGGATATTTTTGATGCAATCCACCTTCACAAGGTGACTCATTTGTGTGGTTCACCAACACTCTTGGAAACCATTGCAGATTATAATGCATTGAATTGTGACCATTATAAGCCTCCGCCCCACAAGGTGAATGTCACAGTTGCTGGTGTACTACCACCAATCCAAGTCCTCAACAAGGTGGCAGAGCTTGGATTTGATGTGAACATTGGATACGGTATGACAGAAGCTCTTGGTCCTGTCATTGTAAGACCCTGGGAACCCAATTCAGATGATGAAAACACAAAGCTGAATTATAGTGAAAAAGGGATTCTTTCAGACTTTATGATGATGCCAGAGGTTGATGTGAAAGATCCAATGACAATGAAGGGTACTCCTCATGATGGGAAAACCATAGGTGAGATCATGTTCAAAGGGAATACTCTCATGATGGGGTACCTCAAAAATTCTTCNAAGGCAATTACTGAAGAATTAGAAGCATTTAGGGGTGGATGGTATAGGACTGGGGACCTTGGTGTTAGGCAACAAAATGGTTCTATAACATTGAAAGATAGAGCAAAAGATATCATTTTTTCAAAGGGAGAAGCTGTGAGCTCACTAGAGGTGGAAGCAGTGTTGTTGAATCATCCAAAGGTTTTGAAAGCAGCTGTTGTGGGGTGGAATGAATATGAGTCACTTTGTGCAATTGTCAAATTGAAGGATGGATGCAGTGCTACTGTTGAAGATATCATCAGGTTTTGTGAAGATCGATTGGCTACACACATGGTTCCTAGGAGTGTGGTCTTTGGGGATTTGCCTGTTAATTCAACTGGGAAGGTTCAGAAATTTCTGATCAGAGAGAAGATCAAAATTAACATTGAAGGGATTGGTAAAAGACTTTGGAATTCCAATATGGTGGAGAATTTTAGGTTCAAAACATCAACAAAAGGGAGGCTTTGGCATTCTAATAGGATGATGGTTGATAAGAGGGGAGTGCCCTTTGACAATTTTGTGAGATGTTGTGGTTTGGCTAGTGACCAACCAATATCTGATGTTGGGTTAAGTCATTCTTCTGATGTGCAGGATCATATTGCATCAGACAATGGCAGCTTTGTGAGCAAGAAAATAATTGAGTTTAATGGGGTGCCTTTGGAAAGTCAGCCTCAACTTCCAAGTGTGCAAACTGAGCTTATAATGCTTTCTTTACCTGCAATTGCTGGACAAGCAATTGAGCCTTTAGCACAATTGATGGAGACTGCTTATATTGGCAGATTGGGAGTGCTGGAGTTAGCATCTGCTGGTAACAAAAATGTGACTGAAATATATAAGGACAGTCCTCATTATACTGCTGAGAGAAAGTTGCTGCCTTCAGTTTCTACTGCCTTAGTATTAGCAACAGGAATTGGTACACTTGAGGCTTTGGCTATGTACTTTGGATCTGGCCTGCTTCTCAGCATGGTTGGAGTATCAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00221	88	4686	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000221s00012489.1	PF00501.23	AMP-binding	1	391	8.30E-53
Glyur000221s00012489.1	PF13193.1	AMP-binding_C	402	473	7.60E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.057
SRR1783600	control	0.078
SRR1783602	moderate drought stress	0.117
SRR1811619	moderate drought stress	0.114

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.082
DRR006520	Root Summer glycyrrhizin high producing strain	0.158
DRR006521	Root Winter glycyrrhizin high producing strain	0.054
DRR006522	Root Winter glycyrrhizin high producing strain	0.052
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.628
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.556

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.834
SRR2868004	Drought Stress (root)	1.782
SRR2967015	Control (root)	1.621

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.702
SRR9715740	Leaf	2.215
SRR9715741	Leaf	4.226
SRR9715739	Root	0.072
SRR9715742	Root	0.127
SRR9715743	Root	0.133

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.631
SRR8749028	MeJA induced 9h	1.525
SRR8749029	MeJA induced 9h	1.182
SRR8749030	Uninduced	0.330
SRR8749031	Uninduced	0.403
SRR8749032	Uninduced	0.385

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.899
SRR8400027	Control - Root	1.131