Gene detail information of Glyur000220s00014783 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25530.1 | 0 | AFG1-like ATPase family protein |
| NR | XP_004498664.1 | 0 | PREDICTED: lactation elevated protein 1-like isoform X1 [Cicer arietinum] |
| COG | NP_539054.1 | 2.00E-54 | ATPase n2B [Brucella melitensis bv. 1 str. 16M] |
| trEMBL | tr|K7MN10|K7MN10_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G31700.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00220 | 210441 | 217690 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000220s00014783.1 | PF03969.11 | AFG1_ATPase | 190 | 539 | 1.30E-64 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.047 |
| SRR1783600 | control | 2.011 |
| SRR1783602 | moderate drought stress | 1.780 |
| SRR1811619 | moderate drought stress | 1.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.978 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.085 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.961 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.931 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.606 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.564 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.029 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.834 |
| SRR2868004 | Drought Stress (root) | 16.036 |
| SRR2967015 | Control (root) | 10.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.230 |
| SRR9715740 | Leaf | 20.377 |
| SRR9715741 | Leaf | 24.216 |
| SRR9715739 | Root | 0.063 |
| SRR9715742 | Root | 0.556 |
| SRR9715743 | Root | 0.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.399 |
| SRR8749028 | MeJA induced 9h | 6.966 |
| SRR8749029 | MeJA induced 9h | 3.829 |
| SRR8749030 | Uninduced | 5.420 |
| SRR8749031 | Uninduced | 3.505 |
| SRR8749032 | Uninduced | 2.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.174 |
| SRR8400027 | Control - Root | 7.254 |