Gene detail

Gene detail information of Glyur000220s00014781

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32400.1	9.00E-115	Mitochondrial substrate carrier family protein
NR	XP_003588726.1	0	Brittle 1 protein-like protein [Medicago truncatula]
Swissprot	tr\|Q9SUV1\|BRT1_ARATH	6.00E-154	Adenine nucleotide transporter BT1, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|G7I6F2\|G7I6F2_MEDTR	0	Substrate carrier family protein {ECO:0000313\|EMBL:AES58977.1}

Sequence

Transcript Sequence

>Glyur000220s00014781.1
TGTCTCTGTGGAGAGTTGTTGTTGAGAGAGGAACAGACACCGATTCACCAACCCCTTCTCCTCCTTCTCCCTTTTCTCTCGCATTCTCCGCCGTCCCATTCCCTTCTTCAATTTTATCTGCCACCCCTTTTTGGTTCCTCAGACAGAGATAAAAAAGAATAAGAAAAAAAGGGGGTTTGTTTATCATATTATCACAAGGTTCTTCTGATTAATAATGGGTGGGAGAGGAATTAATCTATTTGATGACAAAAGAGATGGTCTTTTCTCTGTTTGCAATCTGGGGTCTCAATGGAGTGGTGTTGTTGATAATCATCATCATCAACATGATGGGTATTATTATCCCCTAGGAAGCTTATTTGCAAGCATTGGTCAAATGGGAATGGGGTTTGGTGGACCCAACTCTTCTGATTCTCAAGGAAACAACAGTGGGATGAGGATTCCCTGCACCGAGTTGTATGTTAGGTATGTGCAATCAGAGGGGAAGGTGAAGATTATTGGTGTTCCTGATGAGGANGAGGAGGTGGAGGAGGTGGTTGAAGGGGTTATTAATAAGAGGANGAAAAAGGGTGGTGGTGCCCTTAAGAGGTTGAAGATTAAGGTGAAGAACCCTTCACTGAGGAGGCTTNTTAGTGGTGGCTTTGCTGGGGCAGTGTCACGCACTGCTGTGGCACCCTTGGAGACTATTAGAACTCATTTGATGGTTGGAAGCAGTGGCCATTCCACTGGTGAGGTCTTTCACAACATCATGAACACTGATGGATGGAAAGGGTTGTTTAGGGGCAATCTCGTCAATGTCATTCGGGTTGCNCCTAGCAAGGCCATTGAGGGCATCAATTTAGCTATCATGTGCCCTTCTGCTAGAATGATCTTTGTGACAAATAGTGCTTGTGCTGGAGTTNGTTCAACTATATGCACATATCCTCTCGAGTTACTCAAGACTCGAATAACTATCCAGAGAGGTGTTTATGATGGTCTACTCGATGCATTCGTGAAAATAATTCGCGAAGAGGGTGCTTCGGAACTGTATAGAGGCCTTGCTCCCAGTCTCATTGGAGTCATTCCATATTCTGCCACCAATTACTTTGCCTATGACACTTTAAGGAAAGTGTACAAGAAGGTGTTTAAGCAAGAGAAGATTGGCAACATTGAAACCCTTTTGATAGGATCAGCAGCTGGTGCTATTTCAAGCAGTGCCACTTTCCCACTAGAAGTGGCTCGCAAGCAAATGCAAGTGGGAGCACTCAGTGGAAGGCAGGTTTACAAGAATGTGATTCATGCCCTTGCAAGCATACTTGAGCAAGAAGGGATCCAAGGTTTGTATAGAGGATTGGGACCAAGCTGCATGAAGTTGGTTCCAGCTGCAGGAATCTCTTTCATGTGCTATGAAGCATGCAAGAGGATACTGGTAGAGGATGATGATGATGACGATGAGGAATAGGATGAGTACCCTACCTACCCTGAGTGCTGGTTTTTTGTTTATTTTTGCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00220	179583	183032	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000220s00014781.1	PF00153.22	Mito_carr	132	203	1.50E-15
Glyur000220s00014781.1	PF00153.22	Mito_carr	221	301	1.40E-21
Glyur000220s00014781.1	PF00153.22	Mito_carr	308	399	7.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.141
SRR1783600	control	7.061
SRR1783602	moderate drought stress	5.762
SRR1811619	moderate drought stress	5.894

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.753
DRR006520	Root Summer glycyrrhizin high producing strain	10.738
DRR006521	Root Winter glycyrrhizin high producing strain	4.584
DRR006522	Root Winter glycyrrhizin high producing strain	4.216
DRR006523	Root Summer glycyrrhizin low producing strain	10.661
DRR006524	Root Summer glycyrrhizin low producing strain	10.371
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.648
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.859

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.895
SRR2868004	Drought Stress (root)	13.222
SRR2967015	Control (root)	11.988

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.898
SRR9715740	Leaf	5.428
SRR9715741	Leaf	4.836
SRR9715739	Root	15.292
SRR9715742	Root	12.452
SRR9715743	Root	13.609

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.995
SRR8749028	MeJA induced 9h	2.832
SRR8749029	MeJA induced 9h	3.561
SRR8749030	Uninduced	4.908
SRR8749031	Uninduced	1.252
SRR8749032	Uninduced	3.104

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.246
SRR8400027	Control - Root	18.094