Gene detail information of Glyur000220s00014779.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22760.1 | 3.00E-47 | Tesmin/TSO1-like CXC domain-containing protein |
| NR | KHN06651.1 | 0 | Protein lin-54 like [Glycine soja] |
| Swissprot | tr|Q8L548|TCX3_ARATH | 4.00E-50 | Protein tesmin/TSO1-like CXC 3 |
| trEMBL | tr|Q705X1|Q705X1_LOTJA | 0 | Cysteine-rich polycomb-like protein {ECO:0000313|EMBL:CAF02298.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00220 | 170970 | 177016 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CPP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000220s00014779.1 | PF03638.10 | TCR | 505 | 543 | 1.20E-13 |
| Glyur000220s00014779.1 | PF03638.10 | TCR | 591 | 629 | 4.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.010 |
| SRR1783600 | control | 2.984 |
| SRR1783602 | moderate drought stress | 1.397 |
| SRR1811619 | moderate drought stress | 1.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.209 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.180 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.359 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.383 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.146 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.354 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.285 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.641 |
| SRR2868004 | Drought Stress (root) | 3.526 |
| SRR2967015 | Control (root) | 3.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.910 |
| SRR9715740 | Leaf | 0.145 |
| SRR9715741 | Leaf | 0.192 |
| SRR9715739 | Root | 0.397 |
| SRR9715742 | Root | 0.787 |
| SRR9715743 | Root | 0.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.389 |
| SRR8749028 | MeJA induced 9h | 8.646 |
| SRR8749029 | MeJA induced 9h | 5.939 |
| SRR8749030 | Uninduced | 3.737 |
| SRR8749031 | Uninduced | 2.139 |
| SRR8749032 | Uninduced | 1.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.376 |
| SRR8400027 | Control - Root | 3.081 |