Gene detail information of Glyur000220s00014776 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25460.1 | 1.00E-160 | Protein of unknown function, DUF642 |
| NR | AES58962.2 | 0 | plant/F18G18-200 protein [Medicago truncatula] |
| trEMBL | tr|G7I6D7|G7I6D7_MEDTR | 0 | Plant/F18G18-200 protein {ECO:0000313|EMBL:AES58962.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00220 | 139114 | 142901 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000220s00014776.1 | PF04862.7 | DUF642 | 18 | 174 | 1.60E-65 |
| Glyur000220s00014776.1 | PF04862.7 | DUF642 | 185 | 352 | 8.20E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.826 |
| SRR1783600 | control | 13.848 |
| SRR1783602 | moderate drought stress | 15.270 |
| SRR1811619 | moderate drought stress | 15.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.777 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.659 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.803 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.427 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.493 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.488 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.820 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.934 |
| SRR2868004 | Drought Stress (root) | 5.246 |
| SRR2967015 | Control (root) | 10.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 57.576 |
| SRR9715740 | Leaf | 1.832 |
| SRR9715741 | Leaf | 10.279 |
| SRR9715739 | Root | 22.481 |
| SRR9715742 | Root | 5.018 |
| SRR9715743 | Root | 7.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.015 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.026 |
| SRR8749030 | Uninduced | 0.164 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.051 |
| SRR8400027 | Control - Root | 38.189 |