Gene detail information of Glyur000220s00014775 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25450.1 | 8.00E-43 | Cytochrome bd ubiquinol oxidase, 14kDa subunit |
| NR | XP_011019762.1 | 2.78E-66 | PREDICTED: cytochrome b-c1 complex subunit 7-2-like [Populus euphratica] |
| Swissprot | tr|F4JWS8|QCR72_ARATH | 4.00E-61 | Cytochrome b-c1 complex subunit 7-2 |
| trEMBL | tr|B9H9S6|B9H9S6_POPTR | 1.00E-64 | Cytochrome b-c1 complex subunit 7 {ECO:0000256|PIRNR:PIRNR000022} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00220 | 118447 | 120989 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000220s00014775.1 | PF02271.11 | UCR_14kD | 16 | 109 | 1.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 84.972 |
| SRR1783600 | control | 83.911 |
| SRR1783602 | moderate drought stress | 86.456 |
| SRR1811619 | moderate drought stress | 88.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 165.955 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 136.629 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 65.715 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 77.947 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 82.501 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 78.848 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 141.739 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 121.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 110.226 |
| SRR2868004 | Drought Stress (root) | 81.352 |
| SRR2967015 | Control (root) | 72.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 121.780 |
| SRR9715740 | Leaf | 119.206 |
| SRR9715741 | Leaf | 110.779 |
| SRR9715739 | Root | 30.384 |
| SRR9715742 | Root | 50.867 |
| SRR9715743 | Root | 40.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.401 |
| SRR8749028 | MeJA induced 9h | 20.246 |
| SRR8749029 | MeJA induced 9h | 30.488 |
| SRR8749030 | Uninduced | 20.430 |
| SRR8749031 | Uninduced | 13.990 |
| SRR8749032 | Uninduced | 42.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 272.330 |
| SRR8400027 | Control - Root | 237.275 |