Gene detail information of Glyur000220s00014771 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52740.1 | 1.00E-58 | histone H2A protein 9 |
| NR | XP_009804709.1 | 9.63E-83 | PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris] |
| Swissprot | tr|Q84MP7|H2AV3_ORYSJ | 2.00E-75 | Probable histone H2A variant 3 |
| trEMBL | tr|D7SUM0|D7SUM0_VITVI | 7.00E-83 | Histone H2A {ECO:0000256|RuleBase:RU003556} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00220 | 95562 | 97473 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000220s00014771.1 | PF00125.19 | Histone | 33 | 107 | 6.60E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 71.373 |
| SRR1783600 | control | 71.698 |
| SRR1783602 | moderate drought stress | 78.547 |
| SRR1811619 | moderate drought stress | 78.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 142.546 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 141.325 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 154.688 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 150.904 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 142.811 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 142.423 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.533 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 90.218 |
| SRR2868004 | Drought Stress (root) | 97.746 |
| SRR2967015 | Control (root) | 107.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 67.324 |
| SRR9715740 | Leaf | 109.386 |
| SRR9715741 | Leaf | 83.190 |
| SRR9715739 | Root | 141.112 |
| SRR9715742 | Root | 127.737 |
| SRR9715743 | Root | 131.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 129.137 |
| SRR8749028 | MeJA induced 9h | 71.345 |
| SRR8749029 | MeJA induced 9h | 109.088 |
| SRR8749030 | Uninduced | 72.786 |
| SRR8749031 | Uninduced | 73.319 |
| SRR8749032 | Uninduced | 91.617 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 132.995 |
| SRR8400027 | Control - Root | 131.904 |