Gene detail

Gene detail information of Glyur000220s00014770

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11350.1	2.00E-82	DNAse I-like superfamily protein
NR	AES58957.2	0	carbon catabolite repressor-like protein [Medicago truncatula]
COG	YP_005369360.1	3.00E-07	hypothetical protein COCOR_03385 [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q8VYU4\|CCR4F_ARATH	4.00E-119	Carbon catabolite repressor protein 4 homolog 6
trEMBL	tr\|G7I6D2\|G7I6D2_MEDTR	0	Carbon catabolite repressor-like protein {ECO:0000313\|EMBL:AES58957.2}

Sequence

Transcript Sequence

>Glyur000220s00014770.1
CTCCTCTGACTGTTTCTCTCTCTCTCTCTCTCTCACAATGCGACGCACTCCTCCCACTATCCATTTCCTCGCCGCCACCGACGCCGCTTTCGCCACCGCCACTATGTCTTCGCGCCCTTCTTACCGAGGACATCGGAGAGGATTCTCCGGCCGCTCATACTCTGGAGGGAGAGACCAGTTCGTTACCGGCGACGCGCACTTCCGGTCGGTCCGAGACGTCAATTCGGAACTCCGGCGAGGGGAGAGAGGAAGCTTCGNGAACCAACCGCATTACCATCAGAATCCACCTTACAACCCGAGGCCTCGTCCTCCTCCTCCTCCACCTCACTATCAGAACCCTCAGTTCCGGCACCCTCAACCGCCGCCTCACTCTCAGAATCCTCAGTTCCGCCACCCTCCGCCGCCGTCTCACTATCATAATCCTCAGTTCCGCCACCCTCCGCCGCTGTTTCGGCCATCTCCTCCGTCCGATCACCAACGAGCATTTCGTCCACAGCAGAATTTTCGCCCGCGGCCTCCGGATTATCGAGAATGGGAGCTTGCTCTGACGCCGCCACCTCCTCGTCAANGTGAACGGTTTAAAGTCCTTTCCTATAATATATTGGCTGACTACCTTGCTCTGGACCACCGGGAAAAACTTTATTTTCACATACCTCATTACATGTTGGACTGGCAGTGGAGAAAGGGAAGAATAATTATTGAGCTTGGGTTGTGGTCTGCTGATATCATGTGTTTACAGGAGGTTGATAAATTTGATGAGTTGGCGGAGGATTTGAAGCTTAAGGGATACAGGGGCATCTGGAAGATGCGTACGGGCAATCCAGTTGATGGCTGTGCAATTTTTTGGCGAACTTCAAGCTTGACAGATTCTCGTAAAGTTGTGGTTTGCAACATTCATGTGCTTTACAATCCTAAAAGAGGAGAAATTAAGCTTGGCCAGGTCAGAGTCCTACTGGATAAGGCTAAAGCTGTTTCTATACTCTGGAATAATGCCCCTGTTATTATCTGTGGGGATTTTAATTGTACCCCTAAGAGTCCTTTGTACAACTTTATCGCAGAACAAAAGTTAGATCTGTCTGGAATAGATAGGGATAAGGTATCAGGGCAAGCTTCTGCTACAATTCGCTCATCAAGGCCCTATTATGNTCCTAATTCTAGTGAACGATCTGCTAATGGTTCAGTTCAGGCCACATCCACTGAAGGTGACAAGGAAGTTAATATTGAACAAAATAGTTGTTTGTCAGACATGCAGAATCTGGACACAAAGAGTAACATTTCAGAGACTCAATGTGCTCACACTGTTTTGGATATGTCTGATATGATGAATGTGCAATGTAGAAAAGAGAGTGATGCATATGCAGGAAAAGATACCCAGGAGGCTGTTAACCATAACAATTTTGGTGAAGTTGACAGCGTGAAAGAAGAGCCACATCCTTCTTATAGTAAAGGTGGGCTCCCCACTGATAATATAAATAATGATGAGATTCATGACGTCACACCAATGACCTCTTCAGCTCTTGAAACAGTTCACACTGACACAACTGGGATGGGCAGCACAGAACAAATATCAGATGATATCTCAACTTCAAATCAAGAATCAATGAACGAAAAATTCAACTTACATGACCATAAAGGAAATAAACATATGAAGTCTGACTGTTTCTCAACCTCTCTCCAAGAAGATGATCAAGCTTCCAAGGTGAAGATAGATCTTGAGTCAACAGATCTTCTCAACGTAGAAACATCTTCAACTAAACCATCCAGCCAGACTTCAGTTTTGGATGCTTTTGAAGTCCCTCATCCNGGGTATAGAGAAAGCCCATCTAATGAAGTCATTGCTAATGACCAAATGAATTGCTCATCAACCGCACATCTAGTTGACGAATCACATCAGCCAACCAATATCGACTTTCCACTAGATGAAAAACTAGAGAAAGTGTTCCTTGATGAGATAGATAAAGCCGTTGTAGGCAGTGAAAATATTGGTGACAATGACAATGATTTCATAAATGCCTTACATAATGCCAAAGAAGGTGTCAATGTCGATCTTGACCCATTTGTGAAATCAGATTTTGATAAGTCATATCAGTTTGAGGAATTAGATTCTGCTTCCAACGACTTGTTGCTGCCTGAAGAAAGCAATGAAGTGGAGGGTGACTTGGAGAGTCCGANTTCCAAATCTATTGATGCAGAGGAAACTACTTATAATCCATCATTGTGGACCCCTTCTGAGATAGAAACTGCAACAGGAAATGCAGAGTGCACCTTCTTGGAGCACCCTTTGCTGCTTAGGAGCACGTACACTGAAGCAATGGACTGTTCAGGGACTAGAGACCCCCATGGAGAGCCCCTGGTAACCAGTTATAACAGGCGCTTCTTGGGCACTGTTGACTATATTTGGCGATCTGAAGGTCTGCAAACAACCAGAGTTCTTGCTCCAATGCCTAAATCTGCCATGGAATGGACTCCAGGATTCCCAACAAAGAAATGGGGTAGTGATCANATTGCTTTGGCTTCCGAGTTGGCTTTCTTGAAAGATGATATCGACATCAGCAACAGCAAGGATGTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00220	86192	94380	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000220s00014770.1	PF03372.18	Exo_endo_phos	184	355	1.00E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.449
SRR1783600	control	11.379
SRR1783602	moderate drought stress	28.338
SRR1811619	moderate drought stress	27.914

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.839
DRR006520	Root Summer glycyrrhizin high producing strain	10.646
DRR006521	Root Winter glycyrrhizin high producing strain	7.801
DRR006522	Root Winter glycyrrhizin high producing strain	7.581
DRR006523	Root Summer glycyrrhizin low producing strain	10.630
DRR006524	Root Summer glycyrrhizin low producing strain	10.828
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.867
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.616

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.444
SRR2868004	Drought Stress (root)	13.202
SRR2967015	Control (root)	13.482

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.294
SRR9715740	Leaf	6.138
SRR9715741	Leaf	6.797
SRR9715739	Root	1.975
SRR9715742	Root	9.294
SRR9715743	Root	7.883

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.291
SRR8749028	MeJA induced 9h	17.344
SRR8749029	MeJA induced 9h	7.339
SRR8749030	Uninduced	6.439
SRR8749031	Uninduced	3.970
SRR8749032	Uninduced	4.219

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.644
SRR8400027	Control - Root	17.522