Gene detail

Gene detail information of Glyur000220s00014769

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11330.1	1.00E-128	FAD/NAD(P)-binding oxidoreductase family protein
NR	XP_004513450.1	0	PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Cicer arietinum]
COG	YP_007542273.1	6.00E-18	monooxygenase, FAD-binding protein [Glaciecola psychrophila 170]
trEMBL	tr\|G7I6C9\|G7I6C9_MEDTR	0	FAD/NAD(P)-binding oxidoreductase family protein {ECO:0000313\|EMBL:AES58954.1}

Sequence

Transcript Sequence

>Glyur000220s00014769.1
AAGAAAGAGTAGAGAAGTTTACCCAAAAAAAAAAAAGAAAGAGTGGAGAAGGATGGTTGGGGGAGGAGGGAAGGGAAGGGCAGTGATAGTGGGGGGTAGCATAGCAGGGATATCAAGTGCACATGCTCTTACCTTAGCTGGTTGGGATGTCCTTGTCCTTGAGAAAACCACCTCGCCTCCAACTGGAAGTCCCACTGGTGCAGGTCTTGGTCTCAACCCTCTCTCTCAGCAAATCATTCAGTCNTGGCTTTCACAGCCACAACTCCTACACAACACCACTGTGCCTCTAACTATTGATCAGAACCAGGCAACTGATAGTGAGAAGAAGGTTAGCTGGACATTGGCAAGGGATGAGAGTTTCAACTTCAGAGCAGCACATTGGGCTGATCTTCATGGCCTTCTGTATGATGCACTGCCACCACAAGTATTTTTATGGGGTCACCTTTTTCTCTCTTTCCATGTTGCAGATGACAAGGGTTCTGTCACAGTAAAGGCTAAAGTTCTCAAAACTGGCGAGGTCATTGAGATTGTAGGGGATTTGCTTGTTGCAGCAGATGGCTATTGTGCTTGGAGAGGGGTTCTTGATTTTTCAAAAATCGAGAATTCAGAAACCATCATAGGTATTCGAAAGGCATACTTGGATTTAGGAAAATGCTTGTACTTTGACTTGGCCTCAGGTACACACAGTGTGTTGTATGAGCTTCTGAACAAAAAGCTCAATTGGATTTGGTATGTGAATCAGCCAGAGGAGCCTGAAGTAAAGGGAACCTCAGTGACAATGAAAGTAAGTAGTGACATGATCCAGAAGATGCACCAAGAAGCAGAAAAAGTATGGATTCCTGAGTTGGCAAAAGTCATGAAAGAAACAAAAGACCCCTTCTTAAATTTCATATATGATAGTGATCCCTTGGGGAAGATCTTTTGGGACAATGTAGTATTGGTAGGGGATGCAGCTCACCCCACTACTCCTCACTGCCTCAGAAGCACAAACATGTCAATATTGGATGCAGCAGTGTTAGGGAAATGCATAGAGAAGTGGGGTGCAGAAAAGCTAGAATCAGCATTGGAAGAGTATCAGCTCATTAGGCTACCAGTTACTTCCAAGCAAGTTCTGCATGCAAGGCGTCTTGGTCGCATGAAACAAGGTCTGGTGCTTCCTGATCGAGATCCTTTTGACCCCAAGTTAGCCAAGCCAGAGGATTGCCAGGAACTTCTACAGAGGAACACACCTTTTTTCAATGATGTTCCTTCTCACTTGCTTTAATTCCATCCTCCATTTGATTGCCTGTGATAGTAAAGATTTTACTCACCATCAATGCAACTATTTGTACACTAATAAGGCGATGTGGTGCCTTTGGGCTTCAAACTTTATTTTGGCCATTAAGAGTATTTTTTTTTAACCAAATTGATTTTATTTGGCGTCTTGTTCCATTTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00220	81581	84270	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000220s00014769.1	PF01494.14	FAD_binding_3	11	351	9.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.868
SRR1783600	control	16.056
SRR1783602	moderate drought stress	22.716
SRR1811619	moderate drought stress	22.604

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.772
DRR006520	Root Summer glycyrrhizin high producing strain	14.693
DRR006521	Root Winter glycyrrhizin high producing strain	9.656
DRR006522	Root Winter glycyrrhizin high producing strain	9.319
DRR006523	Root Summer glycyrrhizin low producing strain	15.346
DRR006524	Root Summer glycyrrhizin low producing strain	16.302
DRR006525	Leaf Summer glycyrrhizin high producing strain	67.711
DRR006526	Leaf Summer glycyrrhizin high producing strain	67.065

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.974
SRR2868004	Drought Stress (root)	8.763
SRR2967015	Control (root)	7.880

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.464
SRR9715740	Leaf	43.332
SRR9715741	Leaf	36.455
SRR9715739	Root	5.238
SRR9715742	Root	6.732
SRR9715743	Root	6.966

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.724
SRR8749028	MeJA induced 9h	1.615
SRR8749029	MeJA induced 9h	0.932
SRR8749030	Uninduced	1.753
SRR8749031	Uninduced	0.134
SRR8749032	Uninduced	0.575

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.813
SRR8400027	Control - Root	28.269