Gene detail information of Glyur000220s00014767 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G18790.1 | 3.00E-12 | Ribosomal protein L33 family protein |
| NR | XP_003588939.1 | 1.27E-22 | 50S ribosomal protein L33 [Medicago truncatula] |
| COG | YP_422932.1 | 2.00E-09 | ribosomal protein L33 [Magnetospirillum magneticum AMB-1] |
| trEMBL | tr|G7I920|G7I920_MEDTR | 5.00E-23 | 50S ribosomal protein L33 {ECO:0000313|EMBL:AES59190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00220 | 74659 | 78290 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000220s00014767.1 | PF00471.15 | Ribosomal_L33 | 82 | 114 | 9.00E-06 |
| Glyur000220s00014767.2 | PF00471.15 | Ribosomal_L33 | 60 | 92 | 5.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.459 |
| SRR1783600 | control | 13.731 |
| SRR1783602 | moderate drought stress | 16.598 |
| SRR1811619 | moderate drought stress | 18.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 77.822 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 74.413 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.275 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.359 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 46.798 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 45.251 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.350 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 70.938 |
| SRR2868004 | Drought Stress (root) | 66.043 |
| SRR2967015 | Control (root) | 66.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.555 |
| SRR9715740 | Leaf | 21.743 |
| SRR9715741 | Leaf | 22.214 |
| SRR9715739 | Root | 15.626 |
| SRR9715742 | Root | 20.914 |
| SRR9715743 | Root | 18.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.132 |
| SRR8749028 | MeJA induced 9h | 10.832 |
| SRR8749029 | MeJA induced 9h | 16.228 |
| SRR8749030 | Uninduced | 8.118 |
| SRR8749031 | Uninduced | 4.607 |
| SRR8749032 | Uninduced | 7.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.691 |
| SRR8400027 | Control - Root | 51.315 |