Gene detail

Gene detail information of Glyur000220s00014764

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15520.1	0	pleiotropic drug resistance 12
NR	EMS67309.1	0	ABC transporter G family member 39 [Triticum urartu]
COG	NP_490302.1	2.00E-31	ABC transporter ATP-binding protein [Nostoc sp. PCC 7120]
Swissprot	tr\|Q7PC81\|AB43G_ARATH	0	ABC transporter G family member 43
trEMBL	tr\|M8B1A1\|M8B1A1_TRIUA	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:TRIUR3_24438-P1}

Sequence

Transcript Sequence

>Glyur000220s00014764.1
AGAAGGAATATATATACGATATGGAGGAATTATAACTCAAGTAATAAGAAAAGTCAGTCACTTATGAGAACTAAGAGCAAAGATATGCTAGAAGCTTGGTTTCATTTCACTCATATCATAGCAGTGCTCTAGTTAGCTCTAGTTGTAGCCTTGTTCTTGTAGGAGAGCAAGCAAGCAATAATGGAGAGCAGTGAAGTAGTATCAAGAGTTGATAGCCTAAGAGCTAGTAGTTCCAACATGTGGAGGAACAGTAGCATGGATGTGTTCTCAACATCTGAACGTGAAGATGATGAAGAGGCTCTCAAATGGGCTGCAATTGAGAGACTCCCTACCTACCTACGCATCAGGAGAAGCATACTCAACAACCCAGATGGGAAAGGGATAGAGGTAGTTGACATCAAGCAACTGGGGTTAACTGAGAGAAAGATCCTGCTTGAGAGACTTGTCAAGATAGCAGAAGAAGATCATGAAAAGTTCTTGTTGAAACTCAGGGAAAGAATGAACAGACTGCAATCTGGAACCTTTTTTATCACTGCACATCAAAGAGTTTGTGAATGGCTTCACCAGTTTGATGCTTGCTCAAGTCTTATTGTTCACCTTGAGACAAGAGCTGAATTGGTTTTATTCAGTGACTTGAGGGTTGAACTTTTGAAGTATGTTGAAGTCCGATTTGAGCATGTGAATGTGGAAGCACAAGTTTATGTTGGAGGCAGAGCGTTGCCTTCATTACTCAACTTCTTTGTTAATGTGCTAGAGGGATTCTTAAATTATCTTCATATCATTCCAAGTCCAAAGAAACCGTTACATATACTTCAGAATGTTAGTGGAATCAATGACATTGCTTTTGGGGCCACCAGGCTCTGGAAAGACCACATTGCTCATTCTGGGAGAGTAACATACAATGGGCATGGGCTGGAAGAGTTTGTGCCACAAAGGACATCAGCTTATATAAGTCAACATGATAATCACATTGGAGAAATGACTGTGAGAGAAACACTGGCTTTCTCAGCAAGATGCCAAGGGGTTGGACAGAATTATGGGGAGATGCTGGTTGGACCTATAAGGGTGTTGTTCATGGATGAGATATCAACTGGTTTGGACAGTTCCACAACTTTCCAAATAATCAGCTCAATCCGGCAGTCCATCCATATTCTGAATGGAACTGCACTTGTGTCTCTGCTACAGCCAGCACCAGAAACTTATGAACTATTTGATGATATAATACTTCTCACAGATGGACATATTGTATACCAAGGACCAAGAGAAAATGTACTTGAGTTTTTTGAATCAATGGGCTTCAAGTGTCCTGAAAGAAAAGGAGTTGCTGATTTCTTACAAGAAGTGACATCAAGAAAAGATCAATGGCAATATTGGGCACATAAAGATGAACCTTATAGTTTTGTTACTGTCAAGGATTTTGTGGAAGCCTTCCAGTTATTTCACATAGGCCAAAAGCTTGGAGATGAGCTAGCCAATCCATTTGACAAGTCCAAATGCAATACAAATTCTTTGACTACAAAGAAGTATGGTGTTAACAAGAAGGAGCTGCTAAGGGCTTGTGCTAGCAGAGAATTTTTGCTTATGAAGCGAAACTCTTTTCTTATTTATTTAGCTATCATGACAACAACATTATTTCTACGAGCTAAGATGCATAGGAATACCGTGGAGGACGGAGGAACTTACATGGGTGCACTTTTCTTCACAGTCACTGTGGCAATGTTCAATGGCATATCAGAGCTAAACATGGCCATCATGAAACTTCCTGTCTTTTACAAGCAAAGGGACCTTCTTTTCTATCCTTCATGGGCTTATTCTCTTCCACCATGGATCCTCAAAATACCAATAACACTCGTTGAAGTTGCCATCTGGGAAGCCATATCTTACTATGCCATTGGCTATGATCCAAATTTTGTAAGGCAAGAAGCTTTTAAAACAGTACTTGATAATCCTGTGCATAAACCAGATGGCATCATCACTATTTCGGTTGATGGCAGCATTAGGGAGGGGTGTTATAGTTGCAAACACTGTTGGGGCATTTGCATTGCTAGTAGTTCTGGTTTTAGGAGGATTTGTGATTTCAAGAGGTACAAGAACGCATTCAGAAAGGATCAAGCAGGGCTATCCAAGGAGAATTTGCTTGAGAGAAATGCTTCAACAGCTGAAGAGTTCATTCAGTTACCTACACAGAAGAGCTTTTCTGAAACAAAGAAGGTAGAACAAGAAAGTATATCATCCAGGTCATTCTCTGGAAGAGTTAGTGATGATAAAGCTAATAAAAGTGGAAGGAGGGGCATGGTTCTTCCTTTTCAACCACTATCACTCACTTTTGATGAGATTAGATATTCTGTAGACATGCCACAGGAAATGAAAAGTCAAGGAGTTTTCGAGGATCGTCTTGAACTTTTGAAGGGTGTCAGTGGTGCCTTTAGGCCTGGAGTACTAACAGCTTTGATGGGTGTAAGTGGTGCTGGCAAGACTACTCTAATGGATGTTTTAGCTGGAAGGAAAACTGGTGGATATATTGAAGGAAACATCACAATATCTGGCTACCCAAAGAATCAGAAAACATTTGCTCGCATATCAGGATATTGTGAACAATTTGATATCCACTCTCCCAATGTTACAGTTTATGAATCTTTGCTATATTCTGCATGGCTTCGTTTACCCCCTGAAGTTGATCATGCAACTAGAAAGATGTTCATTGAGGAAGTTATGGAGCTTGTAGAGCTTAACTCAATAAGAGAAGCACTTGTTGGATTGCCAGGAGAGACTGGACTTTCAACCGAGCAGCGCAAGAGGCTCACGATTGCGGTTGAACTTGTCGCCAACCCATCAATAATATTCATGGATGAGCCAACCTCTGGCCTTGATGCTAGAGCAGCTGCAATTGTAATGAGAACTGTGAGGAATACCGTTGACACGGGACGAACCGTGGTTTGCACCATCCATCAGCCAAGTATAGATATATTTGATGCCTTTGATGAGCTGCTACTTCTGAAATTGGGAGGGGAGCAAATATATGCTGGTCCATTAGGCCGCCACTGCTCCCATCTGATTCAGTACTTTGAGGCTATTGAAGGAGTTCCTAAGATCAAAGATGGTTATAATCCTGCAACCTGGATGTTGGAAGTTACATCAGCAGGATCAGAAGCAAGTCTTAAGCTTAGTGTACCTCCTCAAGGTTCAAAGGATCTACACTTTGATACTCAGTATTCACAAACTTTTGTGGCACAATGTAAAGCTTGCCTATGGAAACAGCATTTATCATATTGGCGGAACACGTCATATACTGCAGTTAGACTCCTATTTACAACACTAATAGCTTTGTTGTTTGGGGTCATATTTTGGGACATTGGCTTGAAAAGGAGAAAGGAGCAAGATCTTTTCAATGCAATGGGATCAATGTATGCTGCGGTTACCTTCATTGGAGTACAAAATGGTACCTCAGTGCAGCCAATGGTAGCAGTTGAGAGAACAGTCTTCTACAGAGAGAGAGCTGCTGGAATGTATTCAGCTTTGCCATATGCTCTTGCACAGGTTATTATTGAGCTTCCCCACATCTTGGTTCAGACCCTGGTATATGGGATTATAGTATATGCCATGATGGGATTTGATTGGACAACATCAAAGTTCTTGTGTCCCAACCCACACGTTGCTGCCATATTGTCCAGTGCATTCTATGCAATATGGAGCCTTTTCTCTGGCTTCATCATTCCCTTATCCTGGTACTATTGGGTTTGCCCTGTTGCATGGACCTTGTATGGGTTGGTGGCTTCCCAATATGGAGACAACAGGGGGACACTTGAGAATGGTCAACGGGTTGAAGAATTTGTGAGGGGTTACTTTGGGTTTGAGCATGATTTTCTAGGTGTGGTTGCAGTTGTGGTGGCTGGTTTCTCGGTGTTGTTTGCACTCGTCTTCACCTTTGCCATCAAAGCATTCAACTTCCAAAAGCGATGA

Protein Sequence

>Glyur000220s00014764.1
MESSEVVSRVDSLRASSSNMWRNSSMDVFSTSEREDDEEALKWAAIERLPTYLRIRRSILNNPDGKGIEVVDIKQLGLTERKILLERLVKIAEEDHEKFLLKLRERMNRLQSGTFFITAHQRVCEWLHQFDACSSLIVHLETRAELVLFSDLRVELLKYVEVRFEHVNVEAQVYVGGRALPSLLNFFVNVLEGFLNYLHIIPSPKKPLHILQNVSGINDIAFGATRLWKDHIAHSGRVTYNGHGLEEFVPQRTSAYISQHDNHIGEMTVRETLAFSARCQGVGQNYGEMLVGPIRVLFMDEISTGLDSSTTFQIISSIRQSIHILNGTALVSLLQPAPETYELFDDIILLTDGHIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRKDQWQYWAHKDEPYSFVTVKDFVEAFQLFHIGQKLGDELANPFDKSKCNTNSLTTKKYGVNKKELLRACASREFLLMKRNSFLIYLAIMTTTLFLRAKMHRNTVEDGGTYMGALFFTVTVAMFNGISELNMAIMKLPVFYKQRDLLFYPSWAYSLPPWILKIPITLVEVAIWEAISYYAIGYDPNFVRQEAFKTVLDNPVHKPDGIITISVDGSIREGCYSCKHCWGICIASSSGFRRICDFKRYKNAFRKDQAGLSKENLLERNASTAEEFIQLPTQKSFSETKKVEQESISSRSFSGRVSDDKANKSGRRGMVLPFQPLSLTFDEIRYSVDMPQEMKSQGVFEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKNQKTFARISGYCEQFDIHSPNVTVYESLLYSAWLRLPPEVDHATRKMFIEEVMELVELNSIREALVGLPGETGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKLGGEQIYAGPLGRHCSHLIQYFEAIEGVPKIKDGYNPATWMLEVTSAGSEASLKLSVPPQGSKDLHFDTQYSQTFVAQCKACLWKQHLSYWRNTSYTAVRLLFTTLIALLFGVIFWDIGLKRRKEQDLFNAMGSMYAAVTFIGVQNGTSVQPMVAVERTVFYRERAAGMYSALPYALAQVIIELPHILVQTLVYGIIVYAMMGFDWTTSKFLCPNPHVAAILSSAFYAIWSLFSGFIIPLSWYYWVCPVAWTLYGLVASQYGDNRGTLENGQRVEEFVRGYFGFEHDFLGVVAVVVAGFSVLFALVFTFAIKAFNFQKR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00220	55684	64388	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000220s00014764.1	PF01061.19	ABC2_membrane	456	577	7.10E-16
Glyur000220s00014764.1	PF00005.22	ABC_tran	742	894	2.20E-19
Glyur000220s00014764.1	PF01061.19	ABC2_membrane	1018	1151	2.30E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.553
SRR1783600	control	5.500
SRR1783602	moderate drought stress	3.283
SRR1811619	moderate drought stress	3.445

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.560
DRR006520	Root Summer glycyrrhizin high producing strain	10.373
DRR006521	Root Winter glycyrrhizin high producing strain	0.632
DRR006522	Root Winter glycyrrhizin high producing strain	0.503
DRR006523	Root Summer glycyrrhizin low producing strain	5.770
DRR006524	Root Summer glycyrrhizin low producing strain	5.735
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.971
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.785

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.901
SRR2868004	Drought Stress (root)	17.032
SRR2967015	Control (root)	14.353

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.396
SRR9715740	Leaf	31.394
SRR9715741	Leaf	22.999
SRR9715739	Root	0.942
SRR9715742	Root	9.788
SRR9715743	Root	9.695

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.338
SRR8749028	MeJA induced 9h	6.456
SRR8749029	MeJA induced 9h	2.215
SRR8749030	Uninduced	3.748
SRR8749031	Uninduced	0.748
SRR8749032	Uninduced	1.884

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.664
SRR8400027	Control - Root	27.268